Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5318 | 3' | -51.6 | NC_001798.1 | + | 1293 | 0.7 | 0.907973 |
Target: 5'- gGGCGCGUCGCCGUcggGCuCGAgCaGCg -3' miRNA: 3'- -UUGUGUAGCGGUAua-CGuGCUgGaCG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 1647 | 0.66 | 0.97989 |
Target: 5'- cGGCGCGUCGggguaCAggcgcgcGUGCGCGGCCUccacGCg -3' miRNA: 3'- -UUGUGUAGCg----GUa------UACGUGCUGGA----CG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 2966 | 0.69 | 0.936586 |
Target: 5'- gGGCGCGUCGgCGUGcgGCgggGCGGCCgGCc -3' miRNA: 3'- -UUGUGUAGCgGUAUa-CG---UGCUGGaCG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 7934 | 1.1 | 0.005867 |
Target: 5'- aAACACAUCGCCAUAUGCACGACCUGCu -3' miRNA: 3'- -UUGUGUAGCGGUAUACGUGCUGGACG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 14196 | 0.68 | 0.962464 |
Target: 5'- cAGCACcUCGCCAacu-CGCGACCcagGCg -3' miRNA: 3'- -UUGUGuAGCGGUauacGUGCUGGa--CG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 14784 | 0.73 | 0.767046 |
Target: 5'- uAACGCA-CGCUcggGUGCGCGuaucGCCUGCg -3' miRNA: 3'- -UUGUGUaGCGGua-UACGUGC----UGGACG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 24592 | 0.66 | 0.985902 |
Target: 5'- -cCGCGUgGCCGUggaGUGCcugGCcGCCUGCc -3' miRNA: 3'- uuGUGUAgCGGUA---UACG---UGcUGGACG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 24751 | 0.67 | 0.969147 |
Target: 5'- cGACGCGccccgccugcgCGCCuggcUGCGCGAgCUGCg -3' miRNA: 3'- -UUGUGUa----------GCGGuau-ACGUGCUgGACG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 24810 | 0.67 | 0.969147 |
Target: 5'- uGCugAUgCGCC---UGCGCGgggACCUGCg -3' miRNA: 3'- uUGugUA-GCGGuauACGUGC---UGGACG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 25960 | 0.68 | 0.954834 |
Target: 5'- uGCGC-UgGCCGgcgGCGCGggACCUGCg -3' miRNA: 3'- uUGUGuAgCGGUauaCGUGC--UGGACG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 26337 | 0.71 | 0.840783 |
Target: 5'- gGGCGCGaCGCCGUGcGCGgCGGCCcgGCg -3' miRNA: 3'- -UUGUGUaGCGGUAUaCGU-GCUGGa-CG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 30542 | 0.67 | 0.970375 |
Target: 5'- gGGCgACGUgugUGCCGUGUGCACgGAcgagaucgccccgccCCUGCg -3' miRNA: 3'- -UUG-UGUA---GCGGUAUACGUG-CU---------------GGACG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 31750 | 0.66 | 0.987564 |
Target: 5'- aAGCACAgagucuggGCCGggcagGCGCGACCgacGCg -3' miRNA: 3'- -UUGUGUag------CGGUaua--CGUGCUGGa--CG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 34781 | 0.67 | 0.965921 |
Target: 5'- gAACGCGgaaaCGCCGccgGCGCGGCCcgggGCc -3' miRNA: 3'- -UUGUGUa---GCGGUauaCGUGCUGGa---CG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 38234 | 0.67 | 0.965921 |
Target: 5'- aGGCACGcgggguccguuuUgGUCGUGUGCAgggcguuuuCGGCCUGCc -3' miRNA: 3'- -UUGUGU------------AgCGGUAUACGU---------GCUGGACG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 42466 | 0.66 | 0.988185 |
Target: 5'- cACGCAUCGUCAgggagccGUGCACaacguacggggcgggGACCgguagGCa -3' miRNA: 3'- uUGUGUAGCGGUa------UACGUG---------------CUGGa----CG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 43995 | 0.67 | 0.977513 |
Target: 5'- -gUAgGUCGCgCAgAUGUcuuucACGGCCUGCa -3' miRNA: 3'- uuGUgUAGCG-GUaUACG-----UGCUGGACG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 44178 | 0.66 | 0.982074 |
Target: 5'- cAGCACGcgCGCCucgugGUGCACGAaCaGCg -3' miRNA: 3'- -UUGUGUa-GCGGua---UACGUGCUgGaCG- -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 45202 | 0.66 | 0.97989 |
Target: 5'- cGGCGCAUCGggaCAagAUGCGCcGCCUGg -3' miRNA: 3'- -UUGUGUAGCg--GUa-UACGUGcUGGACg -5' |
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5318 | 3' | -51.6 | NC_001798.1 | + | 46334 | 0.68 | 0.95877 |
Target: 5'- cACGCAgUCGCCGUgcucgGUGguC-ACCUGCg -3' miRNA: 3'- uUGUGU-AGCGGUA-----UACguGcUGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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