miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5318 5' -55.5 NC_001798.1 + 141578 0.66 0.926913
Target:  5'- -aGCUGcggcGGCgGCACGCGacggcCGGCGUg -3'
miRNA:   3'- caCGACaaa-CCG-CGUGCGCa----GCUGCA- -5'
5318 5' -55.5 NC_001798.1 + 17136 0.66 0.92366
Target:  5'- aGUGCgcgGUgaGGCGCGauucCGCGugcgucggaaacucgUCGACGUg -3'
miRNA:   3'- -CACGa--CAaaCCGCGU----GCGC---------------AGCUGCA- -5'
5318 5' -55.5 NC_001798.1 + 52872 0.66 0.915732
Target:  5'- cGUGCUGgggccgcgGGUcCGCGCGUgGACa- -3'
miRNA:   3'- -CACGACaaa-----CCGcGUGCGCAgCUGca -5'
5318 5' -55.5 NC_001798.1 + 119384 0.66 0.902959
Target:  5'- -cGcCUGgcUGGCGCACGCGggccaacUCGGgGa -3'
miRNA:   3'- caC-GACaaACCGCGUGCGC-------AGCUgCa -5'
5318 5' -55.5 NC_001798.1 + 42219 0.67 0.897165
Target:  5'- -cGCgGgucGGCGUGCGCGgCGACGa -3'
miRNA:   3'- caCGaCaaaCCGCGUGCGCaGCUGCa -5'
5318 5' -55.5 NC_001798.1 + 116802 0.67 0.897165
Target:  5'- -cGCg----GGCGCcaacacCGCGUCGACGg -3'
miRNA:   3'- caCGacaaaCCGCGu-----GCGCAGCUGCa -5'
5318 5' -55.5 NC_001798.1 + 98572 0.67 0.890505
Target:  5'- -cGCUGg-UGGcCGCGgugGCGUCGGCGg -3'
miRNA:   3'- caCGACaaACC-GCGUg--CGCAGCUGCa -5'
5318 5' -55.5 NC_001798.1 + 92304 0.67 0.883616
Target:  5'- cUGCUGUcgcuacugucGGCGCGCaGCGgCGACGc -3'
miRNA:   3'- cACGACAaa--------CCGCGUG-CGCaGCUGCa -5'
5318 5' -55.5 NC_001798.1 + 71052 0.67 0.876501
Target:  5'- -cGCgaggaGGUGCGCGUGUCGACc- -3'
miRNA:   3'- caCGacaaaCCGCGUGCGCAGCUGca -5'
5318 5' -55.5 NC_001798.1 + 79153 0.67 0.876501
Target:  5'- -aGCUG---GGCGCGCGCGUCa---- -3'
miRNA:   3'- caCGACaaaCCGCGUGCGCAGcugca -5'
5318 5' -55.5 NC_001798.1 + 78389 0.67 0.869166
Target:  5'- -cGCUGguc-GCGUGCGCGgCGGCGUu -3'
miRNA:   3'- caCGACaaacCGCGUGCGCaGCUGCA- -5'
5318 5' -55.5 NC_001798.1 + 116687 0.67 0.869166
Target:  5'- -cGCaUGUUccacaacgGGCGCGuCGuCGUCGACGg -3'
miRNA:   3'- caCG-ACAAa-------CCGCGU-GC-GCAGCUGCa -5'
5318 5' -55.5 NC_001798.1 + 4217 0.67 0.861616
Target:  5'- -cGCUGgcgGGgGCGCGgG-CGGCGUc -3'
miRNA:   3'- caCGACaaaCCgCGUGCgCaGCUGCA- -5'
5318 5' -55.5 NC_001798.1 + 80038 0.68 0.853856
Target:  5'- cGUGCUGguc-GCGCugGUGgcCGGCGUu -3'
miRNA:   3'- -CACGACaaacCGCGugCGCa-GCUGCA- -5'
5318 5' -55.5 NC_001798.1 + 2944 0.68 0.845893
Target:  5'- -cGCgcagccaGGCGCgcaggcgggGCGCGUCGGCGUg -3'
miRNA:   3'- caCGacaaa--CCGCG---------UGCGCAGCUGCA- -5'
5318 5' -55.5 NC_001798.1 + 148166 0.68 0.829386
Target:  5'- cGUGUUGUgucgUGGUGgGcCGUGUUGugGUg -3'
miRNA:   3'- -CACGACAa---ACCGCgU-GCGCAGCugCA- -5'
5318 5' -55.5 NC_001798.1 + 78874 0.68 0.828541
Target:  5'- -cGCUcUUUgauacucGGCGC-CGCGUCGACGc -3'
miRNA:   3'- caCGAcAAA-------CCGCGuGCGCAGCUGCa -5'
5318 5' -55.5 NC_001798.1 + 71122 0.68 0.820857
Target:  5'- -cGCUGa-UGGCGCGCGUG-CgGACGg -3'
miRNA:   3'- caCGACaaACCGCGUGCGCaG-CUGCa -5'
5318 5' -55.5 NC_001798.1 + 125708 0.69 0.803286
Target:  5'- ----cGUcgGGCGCGCGCGggggCGGCGa -3'
miRNA:   3'- cacgaCAaaCCGCGUGCGCa---GCUGCa -5'
5318 5' -55.5 NC_001798.1 + 72049 0.69 0.803286
Target:  5'- gGUGCUGgccugGGCGCGCGaCuUCGGCc- -3'
miRNA:   3'- -CACGACaaa--CCGCGUGC-GcAGCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.