miRNA display CGI


Results 41 - 60 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 3' -63.3 NC_001798.1 + 2091 0.68 0.457483
Target:  5'- -cACUCCGGggGGGGCccgcccccGGcGCGGCCc- -3'
miRNA:   3'- uuUGGGGCCaaCCCCG--------CC-CGUCGGcu -5'
5319 3' -63.3 NC_001798.1 + 147017 0.68 0.44866
Target:  5'- --cCCCCGGgcgggccGGGGCuuGGCcGCCGAg -3'
miRNA:   3'- uuuGGGGCCaa-----CCCCGc-CCGuCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 2498 0.68 0.44866
Target:  5'- cAGCgCCGc--GGGGCGcGGCGGCCGc -3'
miRNA:   3'- uUUGgGGCcaaCCCCGC-CCGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 24550 0.68 0.439932
Target:  5'- cGGCgCCGGcggUGGuGGC-GGCGGCCGGc -3'
miRNA:   3'- uUUGgGGCCa--ACC-CCGcCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 16221 0.68 0.439932
Target:  5'- -cGCCgCCuGUgggGGGGCGGuGgGGCCGGg -3'
miRNA:   3'- uuUGG-GGcCAa--CCCCGCC-CgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 29376 0.68 0.437333
Target:  5'- --uCCCCGG---GGGCGGGCAccacucagggccgcGCCGGc -3'
miRNA:   3'- uuuGGGGCCaacCCCGCCCGU--------------CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 22077 0.68 0.431302
Target:  5'- cGGCCCCGcccccuUUGGGGCGGaGCcGCCc- -3'
miRNA:   3'- uUUGGGGCc-----AACCCCGCC-CGuCGGcu -5'
5319 3' -63.3 NC_001798.1 + 18825 0.68 0.430444
Target:  5'- gGAACCCCGGUggUGGuucgcccGGCGaaccuucgcaGGCuGGCCGAg -3'
miRNA:   3'- -UUUGGGGCCA--ACC-------CCGC----------CCG-UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 146476 0.68 0.422771
Target:  5'- -cGCCgCGGgcuccGGGGcCGGGCcgGGCCGGc -3'
miRNA:   3'- uuUGGgGCCaa---CCCC-GCCCG--UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 87171 0.68 0.422771
Target:  5'- -uGCCCCGcGUgcagcgcGGGcGaCGGGCGGCUGGc -3'
miRNA:   3'- uuUGGGGC-CAa------CCC-C-GCCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 150153 0.69 0.406018
Target:  5'- cGACCCgCGccucuuccgGGGGCGGGCcGCCGc -3'
miRNA:   3'- uUUGGG-GCcaa------CCCCGCCCGuCGGCu -5'
5319 3' -63.3 NC_001798.1 + 121790 0.69 0.406018
Target:  5'- --gUCUCGGgcGGGGcCGGGCcGGCCGu -3'
miRNA:   3'- uuuGGGGCCaaCCCC-GCCCG-UCGGCu -5'
5319 3' -63.3 NC_001798.1 + 93147 0.69 0.406018
Target:  5'- uGGCCUCGGUgauGGCGGGCGacGCCGc -3'
miRNA:   3'- uUUGGGGCCAaccCCGCCCGU--CGGCu -5'
5319 3' -63.3 NC_001798.1 + 37398 0.69 0.3978
Target:  5'- cGAGCCaCCGGgcGGGuccGUGGGgcCGGCCGAc -3'
miRNA:   3'- -UUUGG-GGCCaaCCC---CGCCC--GUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 74345 0.69 0.3978
Target:  5'- -cGCCCCaaGGUgcgGuGGGCGGGC-GCCa- -3'
miRNA:   3'- uuUGGGG--CCAa--C-CCCGCCCGuCGGcu -5'
5319 3' -63.3 NC_001798.1 + 116187 0.69 0.396984
Target:  5'- cGGgCCCGGagcuGGGCGGGCaggcucaGGCCGAg -3'
miRNA:   3'- uUUgGGGCCaac-CCCGCCCG-------UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 27537 0.69 0.396984
Target:  5'- cAGCCCCgcggcgcgcgggGGgaGGGGCGGcgcccgcgggggaGCGGCCGGc -3'
miRNA:   3'- uUUGGGG------------CCaaCCCCGCC-------------CGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 59540 0.69 0.396169
Target:  5'- gGGACCCCGGaaggcggagagGGGGCugGGGCucgcgucGCCGGu -3'
miRNA:   3'- -UUUGGGGCCaa---------CCCCG--CCCGu------CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 51315 0.69 0.389689
Target:  5'- uGGACCCaCGcGacguuUUGGGGCGGGUGGgCGGu -3'
miRNA:   3'- -UUUGGG-GC-C-----AACCCCGCCCGUCgGCU- -5'
5319 3' -63.3 NC_001798.1 + 12697 0.69 0.389689
Target:  5'- cAGGCCCgGGUUgcugGGGGCGGcgggggcgugguGCGGCgCGAc -3'
miRNA:   3'- -UUUGGGgCCAA----CCCCGCC------------CGUCG-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.