miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 3' -63.3 NC_001798.1 + 73066 0.66 0.529202
Target:  5'- gGGGCCUgGGgggacuacagccUGGGGCcccuGGGuCAGCCGAc -3'
miRNA:   3'- -UUUGGGgCCa-----------ACCCCG----CCC-GUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 76583 0.67 0.524469
Target:  5'- cGGCCCCGcgccguacgucgacgGGGGCGGGCugucccCCGAg -3'
miRNA:   3'- uUUGGGGCcaa------------CCCCGCCCGuc----GGCU- -5'
5319 3' -63.3 NC_001798.1 + 36406 0.67 0.521637
Target:  5'- gGGGCCCCccugccGGgcGGGGCGGuGgGGCgGGg -3'
miRNA:   3'- -UUUGGGG------CCaaCCCCGCC-CgUCGgCU- -5'
5319 3' -63.3 NC_001798.1 + 30749 0.67 0.521637
Target:  5'- --cCCCCGGacccgcgUGGaGGcCGaGGCGGCCGu -3'
miRNA:   3'- uuuGGGGCCa------ACC-CC-GC-CCGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 6370 0.67 0.512241
Target:  5'- cGGGCCggggggCCGGggggccggGGGGcCGGGgGGCCGGg -3'
miRNA:   3'- -UUUGG------GGCCaa------CCCC-GCCCgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 31537 0.67 0.512241
Target:  5'- cGGGCCCCGGggGGGGaGGuCuGCCa- -3'
miRNA:   3'- -UUUGGGGCCaaCCCCgCCcGuCGGcu -5'
5319 3' -63.3 NC_001798.1 + 31268 0.67 0.512241
Target:  5'- gGGAUCUgGGUcugGGGGCGGcccugccgucGCGGCCGu -3'
miRNA:   3'- -UUUGGGgCCAa--CCCCGCC----------CGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 95001 0.67 0.502915
Target:  5'- uGGGCCCCgcaGGgcGGcGCGGGCcuggaGGCCGGg -3'
miRNA:   3'- -UUUGGGG---CCaaCCcCGCCCG-----UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 137461 0.67 0.499206
Target:  5'- -cGCCCggaaaucggcgggGGUUGGGGaGGGgGGCCGGg -3'
miRNA:   3'- uuUGGGg------------CCAACCCCgCCCgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 2434 0.67 0.493664
Target:  5'- uGGGCCCCGGcgGcuGGCGGcGCcAGCCGc -3'
miRNA:   3'- -UUUGGGGCCaaCc-CCGCC-CG-UCGGCu -5'
5319 3' -63.3 NC_001798.1 + 5602 0.67 0.493664
Target:  5'- -cGCCCC-GUUGGuccGCGGGCGGCUc- -3'
miRNA:   3'- uuUGGGGcCAACCc--CGCCCGUCGGcu -5'
5319 3' -63.3 NC_001798.1 + 147051 0.67 0.493664
Target:  5'- -cGCCCCGGccggaGGGGCccccgcaccucGGCGGCCGc -3'
miRNA:   3'- uuUGGGGCCaa---CCCCGc----------CCGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 96978 0.67 0.484492
Target:  5'- cGGACCgCGGcgGGcGGCGGGgCcagGGCCGGc -3'
miRNA:   3'- -UUUGGgGCCaaCC-CCGCCC-G---UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 15276 0.67 0.484492
Target:  5'- -uGCCCCGGguuccGGGCGuGGCGGUgGu -3'
miRNA:   3'- uuUGGGGCCaac--CCCGC-CCGUCGgCu -5'
5319 3' -63.3 NC_001798.1 + 16124 0.67 0.479028
Target:  5'- gAAACCCgGGguugGGGGCggaauaccauaccggGGGCA-CCGAg -3'
miRNA:   3'- -UUUGGGgCCaa--CCCCG---------------CCCGUcGGCU- -5'
5319 3' -63.3 NC_001798.1 + 98605 0.67 0.474498
Target:  5'- cGGCCCCGGcgGccccccgcgccucGGGCGGcGUGGCCGc -3'
miRNA:   3'- uUUGGGGCCaaC-------------CCCGCC-CGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 31865 0.68 0.466398
Target:  5'- -cGCCgCGGagGGGGCGG-CGGCCc- -3'
miRNA:   3'- uuUGGgGCCaaCCCCGCCcGUCGGcu -5'
5319 3' -63.3 NC_001798.1 + 78834 0.68 0.466398
Target:  5'- cGGCCCCGGccccuGGCGcGGCAcGCCGGc -3'
miRNA:   3'- uUUGGGGCCaacc-CCGC-CCGU-CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 146681 0.68 0.465502
Target:  5'- -cACUCCcacguugGGggGGGGCGcGCAGCUGAg -3'
miRNA:   3'- uuUGGGG-------CCaaCCCCGCcCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 2091 0.68 0.457483
Target:  5'- -cACUCCGGggGGGGCccgcccccGGcGCGGCCc- -3'
miRNA:   3'- uuUGGGGCCaaCCCCG--------CC-CGUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.