miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 3' -63.3 NC_001798.1 + 15941 0.72 0.275258
Target:  5'- aGGGCCCCGGgggcccaaUGGGGCG-GCAGaccCCGAc -3'
miRNA:   3'- -UUUGGGGCCa-------ACCCCGCcCGUC---GGCU- -5'
5319 3' -63.3 NC_001798.1 + 16124 0.67 0.479028
Target:  5'- gAAACCCgGGguugGGGGCggaauaccauaccggGGGCA-CCGAg -3'
miRNA:   3'- -UUUGGGgCCaa--CCCCG---------------CCCGUcGGCU- -5'
5319 3' -63.3 NC_001798.1 + 16221 0.68 0.439932
Target:  5'- -cGCCgCCuGUgggGGGGCGGuGgGGCCGGg -3'
miRNA:   3'- uuUGG-GGcCAa--CCCCGCC-CgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 17974 0.66 0.579234
Target:  5'- cGGACgUCGGggGGGGCuGcGCGGCCc- -3'
miRNA:   3'- -UUUGgGGCCaaCCCCGcC-CGUCGGcu -5'
5319 3' -63.3 NC_001798.1 + 18020 0.74 0.203419
Target:  5'- uGGCUCCGGgcaGGG-GGGCGGCCGAa -3'
miRNA:   3'- uUUGGGGCCaacCCCgCCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 18825 0.68 0.430444
Target:  5'- gGAACCCCGGUggUGGuucgcccGGCGaaccuucgcaGGCuGGCCGAg -3'
miRNA:   3'- -UUUGGGGCCA--ACC-------CCGC----------CCG-UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 22077 0.68 0.431302
Target:  5'- cGGCCCCGcccccuUUGGGGCGGaGCcGCCc- -3'
miRNA:   3'- uUUGGGGCc-----AACCCCGCC-CGuCGGcu -5'
5319 3' -63.3 NC_001798.1 + 22394 0.76 0.144801
Target:  5'- gGAACCCCGGcgagccGGGGCGcGGCGGCguCGAu -3'
miRNA:   3'- -UUUGGGGCCaa----CCCCGC-CCGUCG--GCU- -5'
5319 3' -63.3 NC_001798.1 + 22676 0.71 0.281552
Target:  5'- -cACCCCGGUcGGaggcgaugucGGCGGaGCAGCgGAa -3'
miRNA:   3'- uuUGGGGCCAaCC----------CCGCC-CGUCGgCU- -5'
5319 3' -63.3 NC_001798.1 + 23571 0.72 0.251205
Target:  5'- aGGGCCCCGG---GGGCGGcGCcccGGCCGAg -3'
miRNA:   3'- -UUUGGGGCCaacCCCGCC-CG---UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 24550 0.68 0.439932
Target:  5'- cGGCgCCGGcggUGGuGGC-GGCGGCCGGc -3'
miRNA:   3'- uUUGgGGCCa--ACC-CCGcCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 25595 0.66 0.588988
Target:  5'- uGGCCgCGGgccgcgccgGGGGCGGGCcccccCCGGa -3'
miRNA:   3'- uUUGGgGCCaa-------CCCCGCCCGuc---GGCU- -5'
5319 3' -63.3 NC_001798.1 + 27212 0.73 0.22308
Target:  5'- gAAGCCCCcgGGgcGGGGCGcgggggaGGCGGCCGc -3'
miRNA:   3'- -UUUGGGG--CCaaCCCCGC-------CCGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 27270 0.66 0.569515
Target:  5'- cAGCCCCGuggcgcgcGggGGGGagGGGCuGCCGc -3'
miRNA:   3'- uUUGGGGC--------CaaCCCCg-CCCGuCGGCu -5'
5319 3' -63.3 NC_001798.1 + 27537 0.69 0.396984
Target:  5'- cAGCCCCgcggcgcgcgggGGgaGGGGCGGcgcccgcgggggaGCGGCCGGc -3'
miRNA:   3'- uUUGGGG------------CCaaCCCCGCC-------------CGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 29376 0.68 0.437333
Target:  5'- --uCCCCGG---GGGCGGGCAccacucagggccgcGCCGGc -3'
miRNA:   3'- uuuGGGGCCaacCCCGCCCGU--------------CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 30749 0.67 0.521637
Target:  5'- --cCCCCGGacccgcgUGGaGGcCGaGGCGGCCGu -3'
miRNA:   3'- uuuGGGGCCa------ACC-CC-GC-CCGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 31141 0.74 0.198625
Target:  5'- -cGCCCCGGcgcgGGGGCGGcGguGCgGGg -3'
miRNA:   3'- uuUGGGGCCaa--CCCCGCC-CguCGgCU- -5'
5319 3' -63.3 NC_001798.1 + 31268 0.67 0.512241
Target:  5'- gGGAUCUgGGUcugGGGGCGGcccugccgucGCGGCCGu -3'
miRNA:   3'- -UUUGGGgCCAa--CCCCGCC----------CGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 31537 0.67 0.512241
Target:  5'- cGGGCCCCGGggGGGGaGGuCuGCCa- -3'
miRNA:   3'- -UUUGGGGCCaaCCCCgCCcGuCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.