miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 3' -63.3 NC_001798.1 + 33 0.69 0.381687
Target:  5'- --cCCCCGGggGGGGUguuuuuugggGGGgGGCgCGAa -3'
miRNA:   3'- uuuGGGGCCaaCCCCG----------CCCgUCG-GCU- -5'
5319 3' -63.3 NC_001798.1 + 2091 0.68 0.457483
Target:  5'- -cACUCCGGggGGGGCccgcccccGGcGCGGCCc- -3'
miRNA:   3'- uuUGGGGCCaaCCCCG--------CC-CGUCGGcu -5'
5319 3' -63.3 NC_001798.1 + 2260 0.7 0.343353
Target:  5'- -cGCCgCCGGggggcGGGGCGGcGCAGCgCGc -3'
miRNA:   3'- uuUGG-GGCCaa---CCCCGCC-CGUCG-GCu -5'
5319 3' -63.3 NC_001798.1 + 2434 0.67 0.493664
Target:  5'- uGGGCCCCGGcgGcuGGCGGcGCcAGCCGc -3'
miRNA:   3'- -UUUGGGGCCaaCc-CCGCC-CG-UCGGCu -5'
5319 3' -63.3 NC_001798.1 + 2498 0.68 0.44866
Target:  5'- cAGCgCCGc--GGGGCGcGGCGGCCGc -3'
miRNA:   3'- uUUGgGGCcaaCCCCGC-CCGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 2528 0.66 0.569515
Target:  5'- cGGCgUCGGc-GGGGCGGGgGGCgCGGc -3'
miRNA:   3'- uUUGgGGCCaaCCCCGCCCgUCG-GCU- -5'
5319 3' -63.3 NC_001798.1 + 3000 0.81 0.064329
Target:  5'- cGGGCCCCGGgcgcgGGGGCGcGGCGgGCCGGg -3'
miRNA:   3'- -UUUGGGGCCaa---CCCCGC-CCGU-CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 3887 0.76 0.137808
Target:  5'- -cGCCCCGG---GGGCGGGgGGCCGGc -3'
miRNA:   3'- uuUGGGGCCaacCCCGCCCgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 4089 0.69 0.381687
Target:  5'- gGGGgUCCGGgccGGGGCGGGCucGGCCc- -3'
miRNA:   3'- -UUUgGGGCCaa-CCCCGCCCG--UCGGcu -5'
5319 3' -63.3 NC_001798.1 + 4356 0.66 0.550204
Target:  5'- cGAGCgCCGGcggGGGGCGcgccGGCGGCgGu -3'
miRNA:   3'- -UUUGgGGCCaa-CCCCGC----CCGUCGgCu -5'
5319 3' -63.3 NC_001798.1 + 4860 0.71 0.30787
Target:  5'- --gUCCgGGUUcGGGGUGGGCGGCgGu -3'
miRNA:   3'- uuuGGGgCCAA-CCCCGCCCGUCGgCu -5'
5319 3' -63.3 NC_001798.1 + 5602 0.67 0.493664
Target:  5'- -cGCCCC-GUUGGuccGCGGGCGGCUc- -3'
miRNA:   3'- uuUGGGGcCAACCc--CGCCCGUCGGcu -5'
5319 3' -63.3 NC_001798.1 + 6370 0.67 0.512241
Target:  5'- cGGGCCggggggCCGGggggccggGGGGcCGGGgGGCCGGg -3'
miRNA:   3'- -UUUGG------GGCCaa------CCCC-GCCCgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 7071 1.06 0.000973
Target:  5'- cAAACCCCGGUUGGGGCGGGCAGCCGAg -3'
miRNA:   3'- -UUUGGGGCCAACCCCGCCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 11169 0.73 0.228911
Target:  5'- uAACCacgaUGGgggcggUGGGGCGGGCcuGCCGAa -3'
miRNA:   3'- uUUGGg---GCCa-----ACCCCGCCCGu-CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 12697 0.69 0.389689
Target:  5'- cAGGCCCgGGUUgcugGGGGCGGcgggggcgugguGCGGCgCGAc -3'
miRNA:   3'- -UUUGGGgCCAA----CCCCGCC------------CGUCG-GCU- -5'
5319 3' -63.3 NC_001798.1 + 13542 0.7 0.343353
Target:  5'- -cACCCCGGggGGGuCGGuCAGCUGGu -3'
miRNA:   3'- uuUGGGGCCaaCCCcGCCcGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 15276 0.67 0.484492
Target:  5'- -uGCCCCGGguuccGGGCGuGGCGGUgGu -3'
miRNA:   3'- uuUGGGGCCaac--CCCGC-CCGUCGgCu -5'
5319 3' -63.3 NC_001798.1 + 15330 0.69 0.38808
Target:  5'- aGGGCCCCGGcgcgguagcggGGGGCGaGGCGGUg-- -3'
miRNA:   3'- -UUUGGGGCCaa---------CCCCGC-CCGUCGgcu -5'
5319 3' -63.3 NC_001798.1 + 15438 0.8 0.071324
Target:  5'- gGGGCCCCGGagucgUGGGGCGGGgGGUCGc -3'
miRNA:   3'- -UUUGGGGCCa----ACCCCGCCCgUCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.