miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 3' -63.3 NC_001798.1 + 7071 1.06 0.000973
Target:  5'- cAAACCCCGGUUGGGGCGGGCAGCCGAg -3'
miRNA:   3'- -UUUGGGGCCAACCCCGCCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 3000 0.81 0.064329
Target:  5'- cGGGCCCCGGgcgcgGGGGCGcGGCGgGCCGGg -3'
miRNA:   3'- -UUUGGGGCCaa---CCCCGC-CCGU-CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 15438 0.8 0.071324
Target:  5'- gGGGCCCCGGagucgUGGGGCGGGgGGUCGc -3'
miRNA:   3'- -UUUGGGGCCa----ACCCCGCCCgUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 154133 0.78 0.10729
Target:  5'- gGGACCCCGGcggcgGGacauGGCGGGCGGCUGGg -3'
miRNA:   3'- -UUUGGGGCCaa---CC----CCGCCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 3887 0.76 0.137808
Target:  5'- -cGCCCCGG---GGGCGGGgGGCCGGc -3'
miRNA:   3'- uuUGGGGCCaacCCCGCCCgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 36269 0.76 0.144801
Target:  5'- uGGACCCCGGggugggcggcGGGGgGGGguGCCGu -3'
miRNA:   3'- -UUUGGGGCCaa--------CCCCgCCCguCGGCu -5'
5319 3' -63.3 NC_001798.1 + 22394 0.76 0.144801
Target:  5'- gGAACCCCGGcgagccGGGGCGcGGCGGCguCGAu -3'
miRNA:   3'- -UUUGGGGCCaa----CCCCGC-CCGUCG--GCU- -5'
5319 3' -63.3 NC_001798.1 + 36467 0.76 0.146599
Target:  5'- aAGACCCCGGaagcgccgggagGGGGCgccggcgcgacgcGGGCGGCCGGg -3'
miRNA:   3'- -UUUGGGGCCaa----------CCCCG-------------CCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 147497 0.74 0.189333
Target:  5'- cAGGCUCCGGggGGGGgGGGC-GCCu- -3'
miRNA:   3'- -UUUGGGGCCaaCCCCgCCCGuCGGcu -5'
5319 3' -63.3 NC_001798.1 + 31141 0.74 0.198625
Target:  5'- -cGCCCCGGcgcgGGGGCGGcGguGCgGGg -3'
miRNA:   3'- uuUGGGGCCaa--CCCCGCC-CguCGgCU- -5'
5319 3' -63.3 NC_001798.1 + 41458 0.74 0.203419
Target:  5'- -uGCCCCGcc-GGGGgGGGCGGUCGGc -3'
miRNA:   3'- uuUGGGGCcaaCCCCgCCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 18020 0.74 0.203419
Target:  5'- uGGCUCCGGgcaGGG-GGGCGGCCGAa -3'
miRNA:   3'- uUUGGGGCCaacCCCgCCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 61839 0.73 0.218404
Target:  5'- -cGCCCCGGgggaccgGGGaacGCGGGCcGCCGGc -3'
miRNA:   3'- uuUGGGGCCaa-----CCC---CGCCCGuCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 43461 0.73 0.218404
Target:  5'- cGACCCCGcaguacgcgGGGGCGGGCGugagggccGCCGGg -3'
miRNA:   3'- uUUGGGGCcaa------CCCCGCCCGU--------CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 27212 0.73 0.22308
Target:  5'- gAAGCCCCcgGGgcGGGGCGcgggggaGGCGGCCGc -3'
miRNA:   3'- -UUUGGGG--CCaaCCCCGC-------CCGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 135242 0.73 0.228375
Target:  5'- gGAAgCCCGGggGcGGGCGGGCcuggaaaGGCUGGa -3'
miRNA:   3'- -UUUgGGGCCaaC-CCCGCCCG-------UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 11169 0.73 0.228911
Target:  5'- uAACCacgaUGGgggcggUGGGGCGGGCcuGCCGAa -3'
miRNA:   3'- uUUGGg---GCCa-----ACCCCGCCCGu-CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 44837 0.72 0.251205
Target:  5'- cGAACCCggaGGgggUGGGGUGGGggaaAGCCGGc -3'
miRNA:   3'- -UUUGGGg--CCa--ACCCCGCCCg---UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 23571 0.72 0.251205
Target:  5'- aGGGCCCCGG---GGGCGGcGCcccGGCCGAg -3'
miRNA:   3'- -UUUGGGGCCaacCCCGCC-CG---UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 111754 0.72 0.251784
Target:  5'- cGGCCCCGGUcccggccaucgguugGGGGCGcGGguGCCc- -3'
miRNA:   3'- uUUGGGGCCAa--------------CCCCGC-CCguCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.