Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5319 | 3' | -63.3 | NC_001798.1 | + | 73066 | 0.66 | 0.529202 |
Target: 5'- gGGGCCUgGGgggacuacagccUGGGGCcccuGGGuCAGCCGAc -3' miRNA: 3'- -UUUGGGgCCa-----------ACCCCG----CCC-GUCGGCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 4356 | 0.66 | 0.550204 |
Target: 5'- cGAGCgCCGGcggGGGGCGcgccGGCGGCgGu -3' miRNA: 3'- -UUUGgGGCCaa-CCCCGC----CCGUCGgCu -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 67172 | 0.66 | 0.547324 |
Target: 5'- uGGCCCCauggaaaggggggaGGagGGGGCGGGgggaCAGCCu- -3' miRNA: 3'- uUUGGGG--------------CCaaCCCCGCCC----GUCGGcu -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 150564 | 0.66 | 0.540623 |
Target: 5'- cGGCCCgGGgcccgcGGGGCGGcGCGGagaCGGc -3' miRNA: 3'- uUUGGGgCCaa----CCCCGCC-CGUCg--GCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 36799 | 0.66 | 0.540623 |
Target: 5'- gGGACCUCGGUUGGGcgacgucuGCGGucuaGUGGUCGGc -3' miRNA: 3'- -UUUGGGGCCAACCC--------CGCC----CGUCGGCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 33376 | 0.66 | 0.540623 |
Target: 5'- cAGACCCUGGggGuGGUGGGCAGgaGu -3' miRNA: 3'- -UUUGGGGCCaaCcCCGCCCGUCggCu -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 67926 | 0.66 | 0.531099 |
Target: 5'- --uCCCCGGcacacaGGGGUGGGguGCg-- -3' miRNA: 3'- uuuGGGGCCaa----CCCCGCCCguCGgcu -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 146281 | 0.66 | 0.53015 |
Target: 5'- cAGCCggagaggCCGaGcgGGGaGUGGGCGGCCGGg -3' miRNA: 3'- uUUGG-------GGC-CaaCCC-CGCCCGUCGGCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 149179 | 0.66 | 0.53015 |
Target: 5'- ---gUCCGGUggGGGGCGGcuuccuucgggcaGCaAGCCGAg -3' miRNA: 3'- uuugGGGCCAa-CCCCGCC-------------CG-UCGGCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 79043 | 0.66 | 0.559836 |
Target: 5'- -cACCaacaCGGUgucgGGGcuGCGGGCccAGCCGGc -3' miRNA: 3'- uuUGGg---GCCAa---CCC--CGCCCG--UCGGCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 150081 | 0.66 | 0.568545 |
Target: 5'- --cCCCUGGggggcgaGGGGCgagcgcgGGGCGGCgGAg -3' miRNA: 3'- uuuGGGGCCaa-----CCCCG-------CCCGUCGgCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 27270 | 0.66 | 0.569515 |
Target: 5'- cAGCCCCGuggcgcgcGggGGGGagGGGCuGCCGc -3' miRNA: 3'- uUUGGGGC--------CaaCCCCg-CCCGuCGGCu -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 100979 | 0.66 | 0.588988 |
Target: 5'- cGACCCCGGggGcguGGGCGGGgAGg--- -3' miRNA: 3'- uUUGGGGCCaaC---CCCGCCCgUCggcu -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 25595 | 0.66 | 0.588988 |
Target: 5'- uGGCCgCGGgccgcgccgGGGGCGGGCcccccCCGGa -3' miRNA: 3'- uUUGGgGCCaa-------CCCCGCCCGuc---GGCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 17974 | 0.66 | 0.579234 |
Target: 5'- cGGACgUCGGggGGGGCuGcGCGGCCc- -3' miRNA: 3'- -UUUGgGGCCaaCCCCGcC-CGUCGGcu -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 86431 | 0.66 | 0.569515 |
Target: 5'- cGGACCCCGaGgcgcagcccGGGGaCGGG-GGCCGGu -3' miRNA: 3'- -UUUGGGGC-Caa-------CCCC-GCCCgUCGGCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 2528 | 0.66 | 0.569515 |
Target: 5'- cGGCgUCGGc-GGGGCGGGgGGCgCGGc -3' miRNA: 3'- uUUGgGGCCaaCCCCGCCCgUCG-GCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 146083 | 0.66 | 0.569515 |
Target: 5'- gGggUCCgGGgcGaGGCGGGCGGgCGAa -3' miRNA: 3'- -UuuGGGgCCaaCcCCGCCCGUCgGCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 135999 | 0.66 | 0.569515 |
Target: 5'- --gUCCCG---GGGGCGGGgAGUCGGu -3' miRNA: 3'- uuuGGGGCcaaCCCCGCCCgUCGGCU- -5' |
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5319 | 3' | -63.3 | NC_001798.1 | + | 114496 | 0.66 | 0.569515 |
Target: 5'- gAGGCCCUGGacGGGaCGGGCAuuaGCCu- -3' miRNA: 3'- -UUUGGGGCCaaCCCcGCCCGU---CGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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