miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 3' -63.3 NC_001798.1 + 64497 0.72 0.269077
Target:  5'- uGAACCgCCGGagGGGGUGGGCGGgguCCa- -3'
miRNA:   3'- -UUUGG-GGCCaaCCCCGCCCGUC---GGcu -5'
5319 3' -63.3 NC_001798.1 + 96022 0.72 0.275258
Target:  5'- cGGCacaCCGGc-GGGGCGGGCGGgCGGg -3'
miRNA:   3'- uUUGg--GGCCaaCCCCGCCCGUCgGCU- -5'
5319 3' -63.3 NC_001798.1 + 85279 0.72 0.275258
Target:  5'- gAGGCUUCGGg-GGGGCGGG-GGCCGGg -3'
miRNA:   3'- -UUUGGGGCCaaCCCCGCCCgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 15941 0.72 0.275258
Target:  5'- aGGGCCCCGGgggcccaaUGGGGCG-GCAGaccCCGAc -3'
miRNA:   3'- -UUUGGGGCCa-------ACCCCGCcCGUC---GGCU- -5'
5319 3' -63.3 NC_001798.1 + 22676 0.71 0.281552
Target:  5'- -cACCCCGGUcGGaggcgaugucGGCGGaGCAGCgGAa -3'
miRNA:   3'- uuUGGGGCCAaCC----------CCGCC-CGUCGgCU- -5'
5319 3' -63.3 NC_001798.1 + 138161 0.71 0.294482
Target:  5'- --cCCCCGGguccugGGGGCGcgacccGCGGCCGGu -3'
miRNA:   3'- uuuGGGGCCaa----CCCCGCc-----CGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 52325 0.71 0.294482
Target:  5'- -uGCCCCuGGgcagccccGGGGuCGuGGCGGCCGAg -3'
miRNA:   3'- uuUGGGG-CCaa------CCCC-GC-CCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 108108 0.71 0.30651
Target:  5'- uGGGCCCCGGUcuguggguggugaUGGGGguccuggUGGGCGuuGCCGGg -3'
miRNA:   3'- -UUUGGGGCCA-------------ACCCC-------GCCCGU--CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 4860 0.71 0.30787
Target:  5'- --gUCCgGGUUcGGGGUGGGCGGCgGu -3'
miRNA:   3'- uuuGGGgCCAA-CCCCGCCCGUCGgCu -5'
5319 3' -63.3 NC_001798.1 + 153065 0.71 0.310603
Target:  5'- -cGCCCCc--UGGGGCGGGCGgagcggcggggcggcGCCGGg -3'
miRNA:   3'- uuUGGGGccaACCCCGCCCGU---------------CGGCU- -5'
5319 3' -63.3 NC_001798.1 + 101975 0.71 0.314736
Target:  5'- gAGGCCCCGGg-GGGGCGaugugcGGCGGCgGc -3'
miRNA:   3'- -UUUGGGGCCaaCCCCGC------CCGUCGgCu -5'
5319 3' -63.3 NC_001798.1 + 57452 0.7 0.328815
Target:  5'- gGGGgCCCGGUcuuggGGGGCGGG--GCCGGu -3'
miRNA:   3'- -UUUgGGGCCAa----CCCCGCCCguCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 36136 0.7 0.336026
Target:  5'- cGAUCCCGccggUGGGGCGcGGCGGCgGu -3'
miRNA:   3'- uUUGGGGCca--ACCCCGC-CCGUCGgCu -5'
5319 3' -63.3 NC_001798.1 + 36617 0.7 0.336026
Target:  5'- ----gCCGGgcgGGGGCGcgcGGCGGCCGGg -3'
miRNA:   3'- uuuggGGCCaa-CCCCGC---CCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 36575 0.7 0.336026
Target:  5'- ----gCCGGgcgGGGGCGcgcGGCGGCCGGg -3'
miRNA:   3'- uuuggGGCCaa-CCCCGC---CCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 36533 0.7 0.336026
Target:  5'- ----gCCGGgcgGGGGCGcgcGGCGGCCGGg -3'
miRNA:   3'- uuuggGGCCaa-CCCCGC---CCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 147149 0.7 0.343353
Target:  5'- --uUCCCGGccgGGGGUcccGGGUAGCCGc -3'
miRNA:   3'- uuuGGGGCCaa-CCCCG---CCCGUCGGCu -5'
5319 3' -63.3 NC_001798.1 + 13542 0.7 0.343353
Target:  5'- -cACCCCGGggGGGuCGGuCAGCUGGu -3'
miRNA:   3'- uuUGGGGCCaaCCCcGCCcGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 2260 0.7 0.343353
Target:  5'- -cGCCgCCGGggggcGGGGCGGcGCAGCgCGc -3'
miRNA:   3'- uuUGG-GGCCaa---CCCCGCC-CGUCG-GCu -5'
5319 3' -63.3 NC_001798.1 + 148403 0.7 0.343353
Target:  5'- aGGugUgCGGgcGGGGUGGGC-GCCGGg -3'
miRNA:   3'- -UUugGgGCCaaCCCCGCCCGuCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.