miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 5' -53 NC_001798.1 + 7105 1.09 0.005384
Target:  5'- cCUUAAAAGGCACCCCAUCCGACGGCAu -3'
miRNA:   3'- -GAAUUUUCCGUGGGGUAGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 123435 0.75 0.61824
Target:  5'- ----cGGGGCGCCCCccCCGACGcGCGc -3'
miRNA:   3'- gaauuUUCCGUGGGGuaGGCUGC-CGU- -5'
5319 5' -53 NC_001798.1 + 77176 0.74 0.639193
Target:  5'- ----cGGGaGCGCCgCCGUCgCGACGGCAa -3'
miRNA:   3'- gaauuUUC-CGUGG-GGUAG-GCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 83835 0.74 0.649665
Target:  5'- --gGAcGGGCcgguCCCCGUCCGgGCGGCGc -3'
miRNA:   3'- gaaUUuUCCGu---GGGGUAGGC-UGCCGU- -5'
5319 5' -53 NC_001798.1 + 147188 0.74 0.649665
Target:  5'- --cGGAAGGCGucCCCCGcCCGGCGGUc -3'
miRNA:   3'- gaaUUUUCCGU--GGGGUaGGCUGCCGu -5'
5319 5' -53 NC_001798.1 + 7154 0.74 0.670556
Target:  5'- gCUUGAAGGGCACUcgcuuCCGaCCGACGGg- -3'
miRNA:   3'- -GAAUUUUCCGUGG-----GGUaGGCUGCCgu -5'
5319 5' -53 NC_001798.1 + 29608 0.73 0.711868
Target:  5'- -gUAuAAGGCAgCCCCGUgUGACGGUc -3'
miRNA:   3'- gaAUuUUCCGU-GGGGUAgGCUGCCGu -5'
5319 5' -53 NC_001798.1 + 124249 0.73 0.722043
Target:  5'- -----cGGGCACCCCGuggacgcgguuaUCCuGCGGCAg -3'
miRNA:   3'- gaauuuUCCGUGGGGU------------AGGcUGCCGU- -5'
5319 5' -53 NC_001798.1 + 3229 0.72 0.752042
Target:  5'- -----cAGGCGCCCCAg--GGCGGCGa -3'
miRNA:   3'- gaauuuUCCGUGGGGUaggCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 99967 0.72 0.771504
Target:  5'- --cGGGAGGCGCCCagcgccaacgCGUCCGugGaGCGc -3'
miRNA:   3'- gaaUUUUCCGUGGG----------GUAGGCugC-CGU- -5'
5319 5' -53 NC_001798.1 + 116332 0.72 0.781045
Target:  5'- --gGGGGGGCACgagCCCGUCuacgCGGCGGCGu -3'
miRNA:   3'- gaaUUUUCCGUG---GGGUAG----GCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 14461 0.71 0.790446
Target:  5'- -----cAGGCACgCCCc-CCGGCGGCGg -3'
miRNA:   3'- gaauuuUCCGUG-GGGuaGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 53228 0.71 0.799697
Target:  5'- --gGAGGGGCuCCUCAgcgcggCCGugGGCGu -3'
miRNA:   3'- gaaUUUUCCGuGGGGUa-----GGCugCCGU- -5'
5319 5' -53 NC_001798.1 + 147237 0.71 0.817714
Target:  5'- ---cGGGGGCcccgggGCCCCGggccgcgCCGGCGGCGu -3'
miRNA:   3'- gaauUUUCCG------UGGGGUa------GGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 108652 0.71 0.817714
Target:  5'- --cGAGAGGCACCCgGacggCCGAC-GCAa -3'
miRNA:   3'- gaaUUUUCCGUGGGgUa---GGCUGcCGU- -5'
5319 5' -53 NC_001798.1 + 44139 0.71 0.825595
Target:  5'- gCUUu--GGGCGCuCCCAUaauacgcCCGGCGGUAc -3'
miRNA:   3'- -GAAuuuUCCGUG-GGGUA-------GGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 39660 0.71 0.825595
Target:  5'- ----cGGGGCcguaucgACCCCGgccCCGGCGGCGa -3'
miRNA:   3'- gaauuUUCCG-------UGGGGUa--GGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 146630 0.7 0.835025
Target:  5'- --cAuuAGGC-CCCCGcgggcaUCCGGCGGCc -3'
miRNA:   3'- gaaUuuUCCGuGGGGU------AGGCUGCCGu -5'
5319 5' -53 NC_001798.1 + 30459 0.7 0.843394
Target:  5'- ----cAGGGCAgCCCCAcgcccgCCGACGcGCAg -3'
miRNA:   3'- gaauuUUCCGU-GGGGUa-----GGCUGC-CGU- -5'
5319 5' -53 NC_001798.1 + 152643 0.7 0.851562
Target:  5'- ------cGGCGCCCCG-CCGgcGCGGCc -3'
miRNA:   3'- gaauuuuCCGUGGGGUaGGC--UGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.