miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 5' -53 NC_001798.1 + 2430 0.67 0.950652
Target:  5'- ------uGGCuggGCCCCGgcggCUGGCGGCGc -3'
miRNA:   3'- gaauuuuCCG---UGGGGUa---GGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 2615 0.68 0.931769
Target:  5'- ----cGGGGCGCCgC--CCGGCGGCGc -3'
miRNA:   3'- gaauuUUCCGUGGgGuaGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 3229 0.72 0.752042
Target:  5'- -----cAGGCGCCCCAg--GGCGGCGa -3'
miRNA:   3'- gaauuuUCCGUGGGGUaggCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 3295 0.67 0.941705
Target:  5'- ------cGGCgacGCCgCcgCCGACGGCAa -3'
miRNA:   3'- gaauuuuCCG---UGGgGuaGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 3834 0.67 0.946301
Target:  5'- -----cGGGCGCCCCccagaggCCGggGCGGCu -3'
miRNA:   3'- gaauuuUCCGUGGGGua-----GGC--UGCCGu -5'
5319 5' -53 NC_001798.1 + 3898 0.66 0.971833
Target:  5'- --cGGGGGGCcgGCCCCGggCC-ACGGCu -3'
miRNA:   3'- gaaUUUUCCG--UGGGGUa-GGcUGCCGu -5'
5319 5' -53 NC_001798.1 + 4366 0.66 0.971833
Target:  5'- --cGGGGGGCGCgCCGg-CGGCGGUg -3'
miRNA:   3'- gaaUUUUCCGUGgGGUagGCUGCCGu -5'
5319 5' -53 NC_001798.1 + 5596 0.67 0.941705
Target:  5'- ----cGAGGuCGCCCCGuuggUCCGcggGCGGCu -3'
miRNA:   3'- gaauuUUCC-GUGGGGU----AGGC---UGCCGu -5'
5319 5' -53 NC_001798.1 + 7105 1.09 0.005384
Target:  5'- cCUUAAAAGGCACCCCAUCCGACGGCAu -3'
miRNA:   3'- -GAAUUUUCCGUGGGGUAGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 7154 0.74 0.670556
Target:  5'- gCUUGAAGGGCACUcgcuuCCGaCCGACGGg- -3'
miRNA:   3'- -GAAUUUUCCGUGG-----GGUaGGCUGCCgu -5'
5319 5' -53 NC_001798.1 + 7199 0.66 0.971833
Target:  5'- ------cGGCgACCaUgAUCCGGCGGCGg -3'
miRNA:   3'- gaauuuuCCG-UGG-GgUAGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 14461 0.71 0.790446
Target:  5'- -----cAGGCACgCCCc-CCGGCGGCGg -3'
miRNA:   3'- gaauuuUCCGUG-GGGuaGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 21072 0.67 0.958631
Target:  5'- --gGAucGGgGCCCCGUCCcccCGGCc -3'
miRNA:   3'- gaaUUuuCCgUGGGGUAGGcu-GCCGu -5'
5319 5' -53 NC_001798.1 + 21644 0.66 0.968863
Target:  5'- ------cGGUGCCCCGcucgCCGcCGGCGu -3'
miRNA:   3'- gaauuuuCCGUGGGGUa---GGCuGCCGU- -5'
5319 5' -53 NC_001798.1 + 23926 0.7 0.867266
Target:  5'- -----cGGGCGCCCCGgcgCCcguGugGGCGc -3'
miRNA:   3'- gaauuuUCCGUGGGGUa--GG---CugCCGU- -5'
5319 5' -53 NC_001798.1 + 24314 0.67 0.958631
Target:  5'- -cUGAccGGGGCgcgaACCCCcgaCGACGGCGg -3'
miRNA:   3'- gaAUU--UUCCG----UGGGGuagGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 26400 0.66 0.977151
Target:  5'- -----cGGGCGCUgCucgagcCCGACGGCGa -3'
miRNA:   3'- gaauuuUCCGUGGgGua----GGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 27530 0.66 0.962268
Target:  5'- --gGGAAGGCAgCCCCG--CGGCGcGCGg -3'
miRNA:   3'- gaaUUUUCCGU-GGGGUagGCUGC-CGU- -5'
5319 5' -53 NC_001798.1 + 28860 0.66 0.965677
Target:  5'- ---cGAGGGCgGCCUCggCCGGCGGa- -3'
miRNA:   3'- gaauUUUCCG-UGGGGuaGGCUGCCgu -5'
5319 5' -53 NC_001798.1 + 29608 0.73 0.711868
Target:  5'- -gUAuAAGGCAgCCCCGUgUGACGGUc -3'
miRNA:   3'- gaAUuUUCCGU-GGGGUAgGCUGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.