miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 5294 1.09 0.000595
Target:  5'- gCGAUCGACGCCGCCGCGCCCCGGCUCg -3'
miRNA:   3'- -GCUAGCUGCGGCGGCGCGGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 27939 0.85 0.032554
Target:  5'- gGGUccCGGCGCCgGCCGCGCCCCGGCg- -3'
miRNA:   3'- gCUA--GCUGCGG-CGGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 31992 0.8 0.068104
Target:  5'- aGAgggCGGCGCCgcGCCGgGCCCCGGaCUCg -3'
miRNA:   3'- gCUa--GCUGCGG--CGGCgCGGGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 87499 0.78 0.101546
Target:  5'- uCGAUCgGAUGCUGaCCGCguGCCCCGGCUa -3'
miRNA:   3'- -GCUAG-CUGCGGC-GGCG--CGGGGCCGAg -5'
5322 3' -64.5 NC_001798.1 + 23479 0.78 0.099065
Target:  5'- aCGA-CGACGCCGcCCGCGCCCCcGC-Ca -3'
miRNA:   3'- -GCUaGCUGCGGC-GGCGCGGGGcCGaG- -5'
5322 3' -64.5 NC_001798.1 + 145895 0.77 0.126655
Target:  5'- ---cCGAcCGCCGCCGCGCCCCaccGGCg- -3'
miRNA:   3'- gcuaGCU-GCGGCGGCGCGGGG---CCGag -5'
5322 3' -64.5 NC_001798.1 + 27985 0.77 0.112068
Target:  5'- ---cCGGCGCUccagccguGCCGCGCCCCGGCg- -3'
miRNA:   3'- gcuaGCUGCGG--------CGGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 28065 0.75 0.173135
Target:  5'- gCGGUCGagagcGCGCCgGCCGCGUCCUcGCUCc -3'
miRNA:   3'- -GCUAGC-----UGCGG-CGGCGCGGGGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 39648 0.75 0.15892
Target:  5'- -aGUCGGCGCCGCCGgggccguaucgacccCgGCCCCGGCg- -3'
miRNA:   3'- gcUAGCUGCGGCGGC---------------G-CGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 35210 0.75 0.161214
Target:  5'- gCGuUCGuuGCUGCCGCGcCCCCGGUUUu -3'
miRNA:   3'- -GCuAGCugCGGCGGCGC-GGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 21692 0.74 0.185836
Target:  5'- ---gCGAUGCCGCCGCugccGUCCCGGuCUCc -3'
miRNA:   3'- gcuaGCUGCGGCGGCG----CGGGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 29009 0.74 0.199352
Target:  5'- ---cCGcGCGCCGCCGCGCgggCCCGGaCUCc -3'
miRNA:   3'- gcuaGC-UGCGGCGGCGCG---GGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 97396 0.74 0.199352
Target:  5'- uGA-CGACGCCGCUGCuGCggCGGCUCg -3'
miRNA:   3'- gCUaGCUGCGGCGGCG-CGggGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 77213 0.74 0.176862
Target:  5'- aCGGUgGACGCgGCCgugcgggcgcaugGCGCCCUGGCg- -3'
miRNA:   3'- -GCUAgCUGCGgCGG-------------CGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 3367 0.73 0.227395
Target:  5'- gCGGUUGGCgucGCCGCCgucgucggggguucGCGCCCCGGUc- -3'
miRNA:   3'- -GCUAGCUG---CGGCGG--------------CGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 135343 0.73 0.208832
Target:  5'- aCGcgugCGACGCCugccCCGCGCUCCGGCa- -3'
miRNA:   3'- -GCua--GCUGCGGc---GGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 79483 0.73 0.208832
Target:  5'- aGGUCGACccgcaGCUGCUGCGCCgCCGGggCg -3'
miRNA:   3'- gCUAGCUG-----CGGCGGCGCGG-GGCCgaG- -5'
5322 3' -64.5 NC_001798.1 + 122481 0.73 0.223779
Target:  5'- aGA-CGGCGCUGCUGCGUcgcuuuCCCGcGCUCg -3'
miRNA:   3'- gCUaGCUGCGGCGGCGCG------GGGC-CGAG- -5'
5322 3' -64.5 NC_001798.1 + 2617 0.73 0.234242
Target:  5'- ----gGGCGCCGCCcggcgGCGCCCUGGC-Cg -3'
miRNA:   3'- gcuagCUGCGGCGG-----CGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 54661 0.73 0.22896
Target:  5'- gCGGcCGGCaGCCGCggCGCGCCCgcucgCGGCUCa -3'
miRNA:   3'- -GCUaGCUG-CGGCG--GCGCGGG-----GCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.