miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 36223 0.72 0.250703
Target:  5'- ---cCGAcCGCCGCCGCGCCCgCGuuUCu -3'
miRNA:   3'- gcuaGCU-GCGGCGGCGCGGG-GCcgAG- -5'
5322 3' -64.5 NC_001798.1 + 116770 0.72 0.245112
Target:  5'- aCGA-CGGCGCUGCUGUGCuCCgCGGCg- -3'
miRNA:   3'- -GCUaGCUGCGGCGGCGCG-GG-GCCGag -5'
5322 3' -64.5 NC_001798.1 + 75257 0.72 0.245112
Target:  5'- ---aUGugGCCGCCacgGCGgUCCGGCUCg -3'
miRNA:   3'- gcuaGCugCGGCGG---CGCgGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 69199 0.72 0.254108
Target:  5'- aGGUCGGuggggUGCCGCagggccaaaaggaGCGCCCCGGC-Cg -3'
miRNA:   3'- gCUAGCU-----GCGGCGg------------CGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 86876 0.72 0.2622
Target:  5'- gCGGUCGcgcuuuucCGCCGCCGgGaaCCCCGGCg- -3'
miRNA:   3'- -GCUAGCu-------GCGGCGGCgC--GGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 30415 0.72 0.245112
Target:  5'- uGAUgGACGCgGCCaCGcCCCCGGCcCg -3'
miRNA:   3'- gCUAgCUGCGgCGGcGC-GGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 24689 0.72 0.250703
Target:  5'- gGAgccCGGC-CCGCCGCGCCCCcGCg- -3'
miRNA:   3'- gCUa--GCUGcGGCGGCGCGGGGcCGag -5'
5322 3' -64.5 NC_001798.1 + 22931 0.72 0.258706
Target:  5'- cCGA-CGACGCCGCCgccgauGCcgugccgacgaggcgGCCCCGGCg- -3'
miRNA:   3'- -GCUaGCUGCGGCGG------CG---------------CGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 4706 0.72 0.268107
Target:  5'- aGA-CGACGCCGuCCGCGgCa-GGCUCg -3'
miRNA:   3'- gCUaGCUGCGGC-GGCGCgGggCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 78032 0.72 0.256399
Target:  5'- gGGUCGACGCCGa-GC-CCCUGGCg- -3'
miRNA:   3'- gCUAGCUGCGGCggCGcGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 91329 0.71 0.312483
Target:  5'- ----aGACGCCGCCcgaGCCgCCGGCUUc -3'
miRNA:   3'- gcuagCUGCGGCGGcg-CGG-GGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 50226 0.71 0.312483
Target:  5'- gGAUaUGACGcCCGCCGaCGCCCUGGaCg- -3'
miRNA:   3'- gCUA-GCUGC-GGCGGC-GCGGGGCC-Gag -5'
5322 3' -64.5 NC_001798.1 + 9150 0.71 0.310471
Target:  5'- gCGGgcgCGGCGCCGcCCGCGCCggggggcagggucuCUGGCg- -3'
miRNA:   3'- -GCUa--GCUGCGGC-GGCGCGG--------------GGCCGag -5'
5322 3' -64.5 NC_001798.1 + 131329 0.71 0.312483
Target:  5'- ---aCcACGCCGcCCGCGCCCCgGGCg- -3'
miRNA:   3'- gcuaGcUGCGGC-GGCGCGGGG-CCGag -5'
5322 3' -64.5 NC_001798.1 + 116429 0.71 0.312483
Target:  5'- gCGGcCGACGCCGCCGaCGa-CCGGC-Cg -3'
miRNA:   3'- -GCUaGCUGCGGCGGC-GCggGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 119455 0.71 0.292812
Target:  5'- uCGA-CGGCGCCGCCGUuguGCaauCCGGCg- -3'
miRNA:   3'- -GCUaGCUGCGGCGGCG---CGg--GGCCGag -5'
5322 3' -64.5 NC_001798.1 + 26338 0.71 0.299259
Target:  5'- gGcgCGACGCCgugcGCgGCGgCCCGGCg- -3'
miRNA:   3'- gCuaGCUGCGG----CGgCGCgGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 134787 0.71 0.280243
Target:  5'- aCGGUCcACGCCGCCcccggaGCCCUGGCc- -3'
miRNA:   3'- -GCUAGcUGCGGCGGcg----CGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 47802 0.71 0.292812
Target:  5'- uCGuUCGGCGuCCGUCGCgggcucucacgGCCCCGGCc- -3'
miRNA:   3'- -GCuAGCUGC-GGCGGCG-----------CGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 4915 0.71 0.286473
Target:  5'- cCGGUCGuCuCCGCCGCGgCCCGGa-- -3'
miRNA:   3'- -GCUAGCuGcGGCGGCGCgGGGCCgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.