miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 113497 0.71 0.274121
Target:  5'- uGggCGGCGCgGCCcuguGCGCCCUGGUg- -3'
miRNA:   3'- gCuaGCUGCGgCGG----CGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 109685 0.66 0.559398
Target:  5'- ----gGGCGCCGUuccuggcgggCGCGCCCuCGGC-Cg -3'
miRNA:   3'- gcuagCUGCGGCG----------GCGCGGG-GCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 109100 0.66 0.578325
Target:  5'- aCGGcUCGGCGCUGgaCGCcCUCCGGCg- -3'
miRNA:   3'- -GCU-AGCUGCGGCg-GCGcGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 108666 0.68 0.433796
Target:  5'- aCGGcCGACGCaacgCGCCGC-CCCCGGggCc -3'
miRNA:   3'- -GCUaGCUGCG----GCGGCGcGGGGCCgaG- -5'
5322 3' -64.5 NC_001798.1 + 107429 0.66 0.549998
Target:  5'- aCGGggGuCGCCGCgGCGaCCCCGcGCc- -3'
miRNA:   3'- -GCUagCuGCGGCGgCGC-GGGGC-CGag -5'
5322 3' -64.5 NC_001798.1 + 106082 0.68 0.442246
Target:  5'- gCGGUCuGGCgGUCGCgGCGaCCCGGCg- -3'
miRNA:   3'- -GCUAG-CUG-CGGCGgCGCgGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 106031 0.69 0.393001
Target:  5'- cCGGaUGAC-CCGCCGUGCCuuCCGGgUCa -3'
miRNA:   3'- -GCUaGCUGcGGCGGCGCGG--GGCCgAG- -5'
5322 3' -64.5 NC_001798.1 + 105394 0.66 0.568842
Target:  5'- aGggCGGCguucuccaggGCCGCCGCGgCCgCGGUg- -3'
miRNA:   3'- gCuaGCUG----------CGGCGGCGCgGG-GCCGag -5'
5322 3' -64.5 NC_001798.1 + 105212 0.66 0.577375
Target:  5'- gCGA-CGGCGCUGCCccguccgcaGCGCCCuccccccucgccuCGGCg- -3'
miRNA:   3'- -GCUaGCUGCGGCGG---------CGCGGG-------------GCCGag -5'
5322 3' -64.5 NC_001798.1 + 104639 0.67 0.494792
Target:  5'- gCGAUcaCGACGUgggugGCCaGgGCCCCGuGCUCg -3'
miRNA:   3'- -GCUA--GCUGCGg----CGG-CgCGGGGC-CGAG- -5'
5322 3' -64.5 NC_001798.1 + 104143 0.68 0.417181
Target:  5'- -cGUCGACGCCagugGCCGCcccGCCUgGGCg- -3'
miRNA:   3'- gcUAGCUGCGG----CGGCG---CGGGgCCGag -5'
5322 3' -64.5 NC_001798.1 + 102897 0.66 0.539715
Target:  5'- gCGAUCccggccuGcCGCCGCCGCucgGCCacaaGGCUCc -3'
miRNA:   3'- -GCUAG-------CuGCGGCGGCG---CGGgg--CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 102805 0.7 0.354782
Target:  5'- ----gGGCGCCGguuuuauacCCGCGCUCCGGCg- -3'
miRNA:   3'- gcuagCUGCGGC---------GGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 98583 0.68 0.40902
Target:  5'- gCGGU-GGCGUCGgCG-GCCCCGGCg- -3'
miRNA:   3'- -GCUAgCUGCGGCgGCgCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 97912 0.67 0.476944
Target:  5'- gCGAgCGuCGCUGCUGCGCcaccagguggaCCCGGCc- -3'
miRNA:   3'- -GCUaGCuGCGGCGGCGCG-----------GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 97441 0.69 0.40096
Target:  5'- aCGAggaGGCGCugCGCCGCGUgCUGGCg- -3'
miRNA:   3'- -GCUag-CUGCG--GCGGCGCGgGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 97396 0.74 0.199352
Target:  5'- uGA-CGACGCCGCUGCuGCggCGGCUCg -3'
miRNA:   3'- gCUaGCUGCGGCGGCG-CGggGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 96155 0.69 0.393001
Target:  5'- cCGggUGACucgccaugGCgGCCGCGcCCCCGGC-Cg -3'
miRNA:   3'- -GCuaGCUG--------CGgCGGCGC-GGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 93161 0.71 0.299259
Target:  5'- gCGggCGACGCCGCCcugGCCCUGGaguccaUCg -3'
miRNA:   3'- -GCuaGCUGCGGCGGcg-CGGGGCCg-----AG- -5'
5322 3' -64.5 NC_001798.1 + 92933 0.69 0.369751
Target:  5'- gCGGUCGucgggccCGCCGCCGUGgCCCuGCg- -3'
miRNA:   3'- -GCUAGCu------GCGGCGGCGCgGGGcCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.