Results 41 - 60 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5322 | 3' | -64.5 | NC_001798.1 | + | 26338 | 0.71 | 0.299259 |
Target: 5'- gGcgCGACGCCgugcGCgGCGgCCCGGCg- -3' miRNA: 3'- gCuaGCUGCGG----CGgCGCgGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 29628 | 0.71 | 0.299259 |
Target: 5'- aCGGUCGG-GCCGCauuCGCaCCCCGGCa- -3' miRNA: 3'- -GCUAGCUgCGGCG---GCGcGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 1729 | 0.71 | 0.305816 |
Target: 5'- aCGGUgCGGCGCaggucCCGCGCCgCCGGC-Ca -3' miRNA: 3'- -GCUA-GCUGCGgc---GGCGCGG-GGCCGaG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 9150 | 0.71 | 0.310471 |
Target: 5'- gCGGgcgCGGCGCCGcCCGCGCCggggggcagggucuCUGGCg- -3' miRNA: 3'- -GCUa--GCUGCGGC-GGCGCGG--------------GGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 91329 | 0.71 | 0.312483 |
Target: 5'- ----aGACGCCGCCcgaGCCgCCGGCUUc -3' miRNA: 3'- gcuagCUGCGGCGGcg-CGG-GGCCGAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 131329 | 0.71 | 0.312483 |
Target: 5'- ---aCcACGCCGcCCGCGCCCCgGGCg- -3' miRNA: 3'- gcuaGcUGCGGC-GGCGCGGGG-CCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 28807 | 0.71 | 0.312483 |
Target: 5'- gGGUCcucCGCCGCCGCggGCCCgGGCcgUCg -3' miRNA: 3'- gCUAGcu-GCGGCGGCG--CGGGgCCG--AG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 116429 | 0.71 | 0.312483 |
Target: 5'- gCGGcCGACGCCGCCGaCGa-CCGGC-Cg -3' miRNA: 3'- -GCUaGCUGCGGCGGC-GCggGGCCGaG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 50226 | 0.71 | 0.312483 |
Target: 5'- gGAUaUGACGcCCGCCGaCGCCCUGGaCg- -3' miRNA: 3'- gCUA-GCUGC-GGCGGC-GCGGGGCC-Gag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 148790 | 0.7 | 0.319259 |
Target: 5'- gGAgccaGaACGagGCCGgGCCCCGGCUCu -3' miRNA: 3'- gCUag--C-UGCggCGGCgCGGGGCCGAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 25433 | 0.7 | 0.319259 |
Target: 5'- cCGcgCGcuGCGCCGCCccGCcCCCCGGCg- -3' miRNA: 3'- -GCuaGC--UGCGGCGG--CGcGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 92337 | 0.7 | 0.319259 |
Target: 5'- gCGGaCGuCGCCGUCGCGCCCCucaucgucGGCc- -3' miRNA: 3'- -GCUaGCuGCGGCGGCGCGGGG--------CCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 55198 | 0.7 | 0.319259 |
Target: 5'- aCGAaCGuCGCCGCCcucaGCGCCCUGuugacgaaGCUCa -3' miRNA: 3'- -GCUaGCuGCGGCGG----CGCGGGGC--------CGAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 59833 | 0.7 | 0.326145 |
Target: 5'- ----gGGCGCCGCgGuCGCCcgcguCCGGCUCg -3' miRNA: 3'- gcuagCUGCGGCGgC-GCGG-----GGCCGAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 86114 | 0.7 | 0.326145 |
Target: 5'- ----gGACGcCCGCCGCGCCgCGGUc- -3' miRNA: 3'- gcuagCUGC-GGCGGCGCGGgGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 4032 | 0.7 | 0.326145 |
Target: 5'- gCGGcCGGCcaCCGCCGCGCgggCCCGGCg- -3' miRNA: 3'- -GCUaGCUGc-GGCGGCGCG---GGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 31692 | 0.7 | 0.33314 |
Target: 5'- cCGGUgGACGCgcacCG-CGCGCCCCGGUc- -3' miRNA: 3'- -GCUAgCUGCG----GCgGCGCGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 138732 | 0.7 | 0.340245 |
Target: 5'- gGGcCGGCGCgCuCCGCgGCCCCGGCg- -3' miRNA: 3'- gCUaGCUGCG-GcGGCG-CGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 3180 | 0.7 | 0.340245 |
Target: 5'- -cGUCGuCGUCGUCGUcgGCCCCGGC-Cg -3' miRNA: 3'- gcUAGCuGCGGCGGCG--CGGGGCCGaG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 8950 | 0.7 | 0.340245 |
Target: 5'- gCGGg-GugGCCGCCggaccuuuauGCGCCUCGGCg- -3' miRNA: 3'- -GCUagCugCGGCGG----------CGCGGGGCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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