miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 26338 0.71 0.299259
Target:  5'- gGcgCGACGCCgugcGCgGCGgCCCGGCg- -3'
miRNA:   3'- gCuaGCUGCGG----CGgCGCgGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 29628 0.71 0.299259
Target:  5'- aCGGUCGG-GCCGCauuCGCaCCCCGGCa- -3'
miRNA:   3'- -GCUAGCUgCGGCG---GCGcGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 1729 0.71 0.305816
Target:  5'- aCGGUgCGGCGCaggucCCGCGCCgCCGGC-Ca -3'
miRNA:   3'- -GCUA-GCUGCGgc---GGCGCGG-GGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 9150 0.71 0.310471
Target:  5'- gCGGgcgCGGCGCCGcCCGCGCCggggggcagggucuCUGGCg- -3'
miRNA:   3'- -GCUa--GCUGCGGC-GGCGCGG--------------GGCCGag -5'
5322 3' -64.5 NC_001798.1 + 50226 0.71 0.312483
Target:  5'- gGAUaUGACGcCCGCCGaCGCCCUGGaCg- -3'
miRNA:   3'- gCUA-GCUGC-GGCGGC-GCGGGGCC-Gag -5'
5322 3' -64.5 NC_001798.1 + 131329 0.71 0.312483
Target:  5'- ---aCcACGCCGcCCGCGCCCCgGGCg- -3'
miRNA:   3'- gcuaGcUGCGGC-GGCGCGGGG-CCGag -5'
5322 3' -64.5 NC_001798.1 + 116429 0.71 0.312483
Target:  5'- gCGGcCGACGCCGCCGaCGa-CCGGC-Cg -3'
miRNA:   3'- -GCUaGCUGCGGCGGC-GCggGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 91329 0.71 0.312483
Target:  5'- ----aGACGCCGCCcgaGCCgCCGGCUUc -3'
miRNA:   3'- gcuagCUGCGGCGGcg-CGG-GGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 28807 0.71 0.312483
Target:  5'- gGGUCcucCGCCGCCGCggGCCCgGGCcgUCg -3'
miRNA:   3'- gCUAGcu-GCGGCGGCG--CGGGgCCG--AG- -5'
5322 3' -64.5 NC_001798.1 + 148790 0.7 0.319259
Target:  5'- gGAgccaGaACGagGCCGgGCCCCGGCUCu -3'
miRNA:   3'- gCUag--C-UGCggCGGCgCGGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 92337 0.7 0.319259
Target:  5'- gCGGaCGuCGCCGUCGCGCCCCucaucgucGGCc- -3'
miRNA:   3'- -GCUaGCuGCGGCGGCGCGGGG--------CCGag -5'
5322 3' -64.5 NC_001798.1 + 25433 0.7 0.319259
Target:  5'- cCGcgCGcuGCGCCGCCccGCcCCCCGGCg- -3'
miRNA:   3'- -GCuaGC--UGCGGCGG--CGcGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 55198 0.7 0.319259
Target:  5'- aCGAaCGuCGCCGCCcucaGCGCCCUGuugacgaaGCUCa -3'
miRNA:   3'- -GCUaGCuGCGGCGG----CGCGGGGC--------CGAG- -5'
5322 3' -64.5 NC_001798.1 + 59833 0.7 0.326145
Target:  5'- ----gGGCGCCGCgGuCGCCcgcguCCGGCUCg -3'
miRNA:   3'- gcuagCUGCGGCGgC-GCGG-----GGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 4032 0.7 0.326145
Target:  5'- gCGGcCGGCcaCCGCCGCGCgggCCCGGCg- -3'
miRNA:   3'- -GCUaGCUGc-GGCGGCGCG---GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 86114 0.7 0.326145
Target:  5'- ----gGACGcCCGCCGCGCCgCGGUc- -3'
miRNA:   3'- gcuagCUGC-GGCGGCGCGGgGCCGag -5'
5322 3' -64.5 NC_001798.1 + 31692 0.7 0.33314
Target:  5'- cCGGUgGACGCgcacCG-CGCGCCCCGGUc- -3'
miRNA:   3'- -GCUAgCUGCG----GCgGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 51932 0.7 0.340245
Target:  5'- uGGggGcCGCCGCCGUGCCgCuGCUCa -3'
miRNA:   3'- gCUagCuGCGGCGGCGCGGgGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 8950 0.7 0.340245
Target:  5'- gCGGg-GugGCCGCCggaccuuuauGCGCCUCGGCg- -3'
miRNA:   3'- -GCUagCugCGGCGG----------CGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 3180 0.7 0.340245
Target:  5'- -cGUCGuCGUCGUCGUcgGCCCCGGC-Cg -3'
miRNA:   3'- gcUAGCuGCGGCGGCG--CGGGGCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.