Results 61 - 80 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5322 | 3' | -64.5 | NC_001798.1 | + | 138732 | 0.7 | 0.340245 |
Target: 5'- gGGcCGGCGCgCuCCGCgGCCCCGGCg- -3' miRNA: 3'- gCUaGCUGCG-GcGGCG-CGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 37146 | 0.7 | 0.345283 |
Target: 5'- uGAgCGugGCCGCuCGCGCCgCGccgccuggcgggccGCUCg -3' miRNA: 3'- gCUaGCugCGGCG-GCGCGGgGC--------------CGAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 126301 | 0.7 | 0.347459 |
Target: 5'- aGA-CGGCGCCGUCuccggagccCGCCCCGGgUCc -3' miRNA: 3'- gCUaGCUGCGGCGGc--------GCGGGGCCgAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 25088 | 0.7 | 0.347459 |
Target: 5'- ----gGGCGCCGCCgggcgGCGCCCCGcGCc- -3' miRNA: 3'- gcuagCUGCGGCGG-----CGCGGGGC-CGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 26160 | 0.7 | 0.347459 |
Target: 5'- cCGcgCGAguacCGCCgcGCCGUGCuCCCGGCg- -3' miRNA: 3'- -GCuaGCU----GCGG--CGGCGCG-GGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 80301 | 0.7 | 0.347459 |
Target: 5'- cCGAaacCGAC-CCGCUgGCGCCCUGGCg- -3' miRNA: 3'- -GCUa--GCUGcGGCGG-CGCGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 149258 | 0.7 | 0.347459 |
Target: 5'- cCGGcCGGCGCgGgCGCGCCCU-GCUCc -3' miRNA: 3'- -GCUaGCUGCGgCgGCGCGGGGcCGAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 45076 | 0.7 | 0.347459 |
Target: 5'- aCGAcaccCGGCGCCucgugaagGCgCGCGCCCUGGCcCg -3' miRNA: 3'- -GCUa---GCUGCGG--------CG-GCGCGGGGCCGaG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 24936 | 0.7 | 0.354044 |
Target: 5'- uGAgCucCGCCGCCGCGCCgCCGcggaccuGCUCu -3' miRNA: 3'- gCUaGcuGCGGCGGCGCGG-GGC-------CGAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 76553 | 0.7 | 0.354782 |
Target: 5'- gGAcagCGACGCgGCCuuCGUCCCGGCg- -3' miRNA: 3'- gCUa--GCUGCGgCGGc-GCGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 2413 | 0.7 | 0.354782 |
Target: 5'- cCGAg-GGCGCCggcgugugGCUGgGCCCCGGCg- -3' miRNA: 3'- -GCUagCUGCGG--------CGGCgCGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 20779 | 0.7 | 0.354782 |
Target: 5'- gCGA-CGGCGcCCGCCGCGUaggucuCCCGcCUCa -3' miRNA: 3'- -GCUaGCUGC-GGCGGCGCG------GGGCcGAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 102805 | 0.7 | 0.354782 |
Target: 5'- ----gGGCGCCGguuuuauacCCGCGCUCCGGCg- -3' miRNA: 3'- gcuagCUGCGGC---------GGCGCGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 26068 | 0.7 | 0.354782 |
Target: 5'- cCGAcgCGcCGCCGCUGCGCCUCuGC-Cg -3' miRNA: 3'- -GCUa-GCuGCGGCGGCGCGGGGcCGaG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 32027 | 0.69 | 0.362213 |
Target: 5'- uCGggCGACcgcggccacggGCCGCU-CGCCCCGGCg- -3' miRNA: 3'- -GCuaGCUG-----------CGGCGGcGCGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 54792 | 0.69 | 0.369751 |
Target: 5'- aCGAU-GACGCCGCCaUGCCCgCGGgCgUCg -3' miRNA: 3'- -GCUAgCUGCGGCGGcGCGGG-GCC-G-AG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 92933 | 0.69 | 0.369751 |
Target: 5'- gCGGUCGucgggccCGCCGCCGUGgCCCuGCg- -3' miRNA: 3'- -GCUAGCu------GCGGCGGCGCgGGGcCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 81794 | 0.69 | 0.369751 |
Target: 5'- cCGAggggUGGCGuCCGCCGgcacucccCGCCCCGGUc- -3' miRNA: 3'- -GCUa---GCUGC-GGCGGC--------GCGGGGCCGag -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 79440 | 0.69 | 0.377396 |
Target: 5'- --cUCGACGC--CCGCGCCCgGGcCUCu -3' miRNA: 3'- gcuAGCUGCGgcGGCGCGGGgCC-GAG- -5' |
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5322 | 3' | -64.5 | NC_001798.1 | + | 61189 | 0.69 | 0.377396 |
Target: 5'- uGGUCGGCcugcaCCGgCGCGCgCCGGCg- -3' miRNA: 3'- gCUAGCUGc----GGCgGCGCGgGGCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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