miRNA display CGI


Results 61 - 80 of 209 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 138732 0.7 0.340245
Target:  5'- gGGcCGGCGCgCuCCGCgGCCCCGGCg- -3'
miRNA:   3'- gCUaGCUGCG-GcGGCG-CGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 37146 0.7 0.345283
Target:  5'- uGAgCGugGCCGCuCGCGCCgCGccgccuggcgggccGCUCg -3'
miRNA:   3'- gCUaGCugCGGCG-GCGCGGgGC--------------CGAG- -5'
5322 3' -64.5 NC_001798.1 + 126301 0.7 0.347459
Target:  5'- aGA-CGGCGCCGUCuccggagccCGCCCCGGgUCc -3'
miRNA:   3'- gCUaGCUGCGGCGGc--------GCGGGGCCgAG- -5'
5322 3' -64.5 NC_001798.1 + 25088 0.7 0.347459
Target:  5'- ----gGGCGCCGCCgggcgGCGCCCCGcGCc- -3'
miRNA:   3'- gcuagCUGCGGCGG-----CGCGGGGC-CGag -5'
5322 3' -64.5 NC_001798.1 + 26160 0.7 0.347459
Target:  5'- cCGcgCGAguacCGCCgcGCCGUGCuCCCGGCg- -3'
miRNA:   3'- -GCuaGCU----GCGG--CGGCGCG-GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 80301 0.7 0.347459
Target:  5'- cCGAaacCGAC-CCGCUgGCGCCCUGGCg- -3'
miRNA:   3'- -GCUa--GCUGcGGCGG-CGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 149258 0.7 0.347459
Target:  5'- cCGGcCGGCGCgGgCGCGCCCU-GCUCc -3'
miRNA:   3'- -GCUaGCUGCGgCgGCGCGGGGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 45076 0.7 0.347459
Target:  5'- aCGAcaccCGGCGCCucgugaagGCgCGCGCCCUGGCcCg -3'
miRNA:   3'- -GCUa---GCUGCGG--------CG-GCGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 24936 0.7 0.354044
Target:  5'- uGAgCucCGCCGCCGCGCCgCCGcggaccuGCUCu -3'
miRNA:   3'- gCUaGcuGCGGCGGCGCGG-GGC-------CGAG- -5'
5322 3' -64.5 NC_001798.1 + 76553 0.7 0.354782
Target:  5'- gGAcagCGACGCgGCCuuCGUCCCGGCg- -3'
miRNA:   3'- gCUa--GCUGCGgCGGc-GCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 2413 0.7 0.354782
Target:  5'- cCGAg-GGCGCCggcgugugGCUGgGCCCCGGCg- -3'
miRNA:   3'- -GCUagCUGCGG--------CGGCgCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 20779 0.7 0.354782
Target:  5'- gCGA-CGGCGcCCGCCGCGUaggucuCCCGcCUCa -3'
miRNA:   3'- -GCUaGCUGC-GGCGGCGCG------GGGCcGAG- -5'
5322 3' -64.5 NC_001798.1 + 102805 0.7 0.354782
Target:  5'- ----gGGCGCCGguuuuauacCCGCGCUCCGGCg- -3'
miRNA:   3'- gcuagCUGCGGC---------GGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 26068 0.7 0.354782
Target:  5'- cCGAcgCGcCGCCGCUGCGCCUCuGC-Cg -3'
miRNA:   3'- -GCUa-GCuGCGGCGGCGCGGGGcCGaG- -5'
5322 3' -64.5 NC_001798.1 + 32027 0.69 0.362213
Target:  5'- uCGggCGACcgcggccacggGCCGCU-CGCCCCGGCg- -3'
miRNA:   3'- -GCuaGCUG-----------CGGCGGcGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 54792 0.69 0.369751
Target:  5'- aCGAU-GACGCCGCCaUGCCCgCGGgCgUCg -3'
miRNA:   3'- -GCUAgCUGCGGCGGcGCGGG-GCC-G-AG- -5'
5322 3' -64.5 NC_001798.1 + 92933 0.69 0.369751
Target:  5'- gCGGUCGucgggccCGCCGCCGUGgCCCuGCg- -3'
miRNA:   3'- -GCUAGCu------GCGGCGGCGCgGGGcCGag -5'
5322 3' -64.5 NC_001798.1 + 81794 0.69 0.369751
Target:  5'- cCGAggggUGGCGuCCGCCGgcacucccCGCCCCGGUc- -3'
miRNA:   3'- -GCUa---GCUGC-GGCGGC--------GCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 79440 0.69 0.377396
Target:  5'- --cUCGACGC--CCGCGCCCgGGcCUCu -3'
miRNA:   3'- gcuAGCUGCGgcGGCGCGGGgCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 61189 0.69 0.377396
Target:  5'- uGGUCGGCcugcaCCGgCGCGCgCCGGCg- -3'
miRNA:   3'- gCUAGCUGc----GGCgGCGCGgGGCCGag -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.