miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 28807 0.71 0.312483
Target:  5'- gGGUCcucCGCCGCCGCggGCCCgGGCcgUCg -3'
miRNA:   3'- gCUAGcu-GCGGCGGCG--CGGGgCCG--AG- -5'
5322 3' -64.5 NC_001798.1 + 29009 0.74 0.199352
Target:  5'- ---cCGcGCGCCGCCGCGCgggCCCGGaCUCc -3'
miRNA:   3'- gcuaGC-UGCGGCGGCGCG---GGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 29041 0.69 0.377396
Target:  5'- ---cCGGCGaCCGCCcCGCgCCGGCUUc -3'
miRNA:   3'- gcuaGCUGC-GGCGGcGCGgGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 29628 0.71 0.299259
Target:  5'- aCGGUCGG-GCCGCauuCGCaCCCCGGCa- -3'
miRNA:   3'- -GCUAGCUgCGGCG---GCGcGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 29658 0.68 0.417181
Target:  5'- gCGAgCGACGgaGCgGCGgCCCGGCg- -3'
miRNA:   3'- -GCUaGCUGCggCGgCGCgGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 29728 0.68 0.451648
Target:  5'- aGAgaccgCGG-GCCGCCGUcucgagucuacccuaCCCCGGCUCa -3'
miRNA:   3'- gCUa----GCUgCGGCGGCGc--------------GGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 29814 0.69 0.385146
Target:  5'- cCGAgCGGcCGCCGCgGCagacCCCCGGCa- -3'
miRNA:   3'- -GCUaGCU-GCGGCGgCGc---GGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 30415 0.72 0.245112
Target:  5'- uGAUgGACGCgGCCaCGcCCCCGGCcCg -3'
miRNA:   3'- gCUAgCUGCGgCGGcGC-GGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 31202 0.66 0.559398
Target:  5'- cCGAcCGGCGCCcCCugGCGCCCCGcggaGCa- -3'
miRNA:   3'- -GCUaGCUGCGGcGG--CGCGGGGC----CGag -5'
5322 3' -64.5 NC_001798.1 + 31579 0.68 0.42544
Target:  5'- cCGcgCGcccccGCGCgGCCGuCGCCCCGcGCg- -3'
miRNA:   3'- -GCuaGC-----UGCGgCGGC-GCGGGGC-CGag -5'
5322 3' -64.5 NC_001798.1 + 31615 0.66 0.540647
Target:  5'- gGAgucCGccccGCGCCGCCGcCGCCCCcguGGUg- -3'
miRNA:   3'- gCUa--GC----UGCGGCGGC-GCGGGG---CCGag -5'
5322 3' -64.5 NC_001798.1 + 31692 0.7 0.33314
Target:  5'- cCGGUgGACGCgcacCG-CGCGCCCCGGUc- -3'
miRNA:   3'- -GCUAgCUGCG----GCgGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 31992 0.8 0.068104
Target:  5'- aGAgggCGGCGCCgcGCCGgGCCCCGGaCUCg -3'
miRNA:   3'- gCUa--GCUGCGG--CGGCgCGGGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 32027 0.69 0.362213
Target:  5'- uCGggCGACcgcggccacggGCCGCU-CGCCCCGGCg- -3'
miRNA:   3'- -GCuaGCUG-----------CGGCGGcGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 35210 0.75 0.161214
Target:  5'- gCGuUCGuuGCUGCCGCGcCCCCGGUUUu -3'
miRNA:   3'- -GCuAGCugCGGCGGCGC-GGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 35436 0.66 0.549998
Target:  5'- gCGGgaggCGugGgCCGCUgGCGCCgCGGCcCg -3'
miRNA:   3'- -GCUa---GCugC-GGCGG-CGCGGgGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 36223 0.72 0.250703
Target:  5'- ---cCGAcCGCCGCCGCGCCCgCGuuUCu -3'
miRNA:   3'- gcuaGCU-GCGGCGGCGCGGG-GCcgAG- -5'
5322 3' -64.5 NC_001798.1 + 37146 0.7 0.345283
Target:  5'- uGAgCGugGCCGCuCGCGCCgCGccgccuggcgggccGCUCg -3'
miRNA:   3'- gCUaGCugCGGCG-GCGCGGgGC--------------CGAG- -5'
5322 3' -64.5 NC_001798.1 + 37503 0.67 0.50383
Target:  5'- aCGcgCGGC-CCGCUGUGCgUCGaGCUCc -3'
miRNA:   3'- -GCuaGCUGcGGCGGCGCGgGGC-CGAG- -5'
5322 3' -64.5 NC_001798.1 + 39648 0.75 0.15892
Target:  5'- -aGUCGGCGCCGCCGgggccguaucgacccCgGCCCCGGCg- -3'
miRNA:   3'- gcUAGCUGCGGCGGC---------------G-CGGGGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.