miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 150811 0.67 0.494792
Target:  5'- ----gGGCGCCGCCGCuGCUgCuGCUCc -3'
miRNA:   3'- gcuagCUGCGGCGGCG-CGGgGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 22863 0.67 0.494792
Target:  5'- gGAcCGuCGCCccGCCGCgcgGCCCgGGUUCg -3'
miRNA:   3'- gCUaGCuGCGG--CGGCG---CGGGgCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 48383 0.67 0.494792
Target:  5'- gGggCG-UGCCGCCGCGaccgcacgggcCCCCGcccGCUCg -3'
miRNA:   3'- gCuaGCuGCGGCGGCGC-----------GGGGC---CGAG- -5'
5322 3' -64.5 NC_001798.1 + 77646 0.67 0.494792
Target:  5'- aCGAacUUGAgGCCGCCGuCGCCgaccugaCGGCg- -3'
miRNA:   3'- -GCU--AGCUgCGGCGGC-GCGGg------GCCGag -5'
5322 3' -64.5 NC_001798.1 + 39830 0.67 0.494792
Target:  5'- gGAUCGuCGgcuccCCGCCGCGCugCCgGGCg- -3'
miRNA:   3'- gCUAGCuGC-----GGCGGCGCG--GGgCCGag -5'
5322 3' -64.5 NC_001798.1 + 134302 0.67 0.494792
Target:  5'- --uUCGuC-CCGCUGCGCCUgGGCUg -3'
miRNA:   3'- gcuAGCuGcGGCGGCGCGGGgCCGAg -5'
5322 3' -64.5 NC_001798.1 + 52370 0.67 0.494792
Target:  5'- uGggCGACaCCGCggCGCGCCgCCuGCUCg -3'
miRNA:   3'- gCuaGCUGcGGCG--GCGCGG-GGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 66147 0.67 0.485829
Target:  5'- --uUCaGCGCCGaCUGCaGCCCCcGCUCg -3'
miRNA:   3'- gcuAGcUGCGGC-GGCG-CGGGGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 23339 0.67 0.485829
Target:  5'- ---cCGcCGCCGgCGCGCCCCccgccggcGCUCg -3'
miRNA:   3'- gcuaGCuGCGGCgGCGCGGGGc-------CGAG- -5'
5322 3' -64.5 NC_001798.1 + 79386 0.67 0.476944
Target:  5'- aCGGgcgCgGGCGCggaguccgCGcCCGCGCCCCuGCUCg -3'
miRNA:   3'- -GCUa--G-CUGCG--------GC-GGCGCGGGGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 141120 0.67 0.476944
Target:  5'- ----gGACGCCGCCgGCGCaUCGGCa- -3'
miRNA:   3'- gcuagCUGCGGCGG-CGCGgGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 24750 0.67 0.476944
Target:  5'- ---cCGACGCgcccCGCCuGCGCgCCUGGCUg -3'
miRNA:   3'- gcuaGCUGCG----GCGG-CGCG-GGGCCGAg -5'
5322 3' -64.5 NC_001798.1 + 97912 0.67 0.476944
Target:  5'- gCGAgCGuCGCUGCUGCGCcaccagguggaCCCGGCc- -3'
miRNA:   3'- -GCUaGCuGCGGCGGCGCG-----------GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 42717 0.67 0.46814
Target:  5'- ---cCGuCGCCGUCGuCGCCaCCGGC-Cg -3'
miRNA:   3'- gcuaGCuGCGGCGGC-GCGG-GGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 1182 0.67 0.46814
Target:  5'- --cUCcACGCCGCCGCccGCCgCGGC-Ca -3'
miRNA:   3'- gcuAGcUGCGGCGGCG--CGGgGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 149662 0.67 0.46814
Target:  5'- ----gGGCGCCggGUCGCggGCCCCgGGCUCg -3'
miRNA:   3'- gcuagCUGCGG--CGGCG--CGGGG-CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 122370 0.67 0.46814
Target:  5'- gCGggCGACG-CGCC-CGCCCCccgcGGCUg -3'
miRNA:   3'- -GCuaGCUGCgGCGGcGCGGGG----CCGAg -5'
5322 3' -64.5 NC_001798.1 + 76389 0.67 0.46814
Target:  5'- uCGGUCcuGACcgaCGCCGCGaCCCaggGGCUCa -3'
miRNA:   3'- -GCUAG--CUGcg-GCGGCGC-GGGg--CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 66027 0.67 0.46814
Target:  5'- gCGAUgUGGCGCaUGCCGCGggucgCCCGGCa- -3'
miRNA:   3'- -GCUA-GCUGCG-GCGGCGCg----GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 2448 0.67 0.467265
Target:  5'- uGG-CGGCGCCaGCCGCccugcgggucgggGCCCuCGGCg- -3'
miRNA:   3'- gCUaGCUGCGG-CGGCG-------------CGGG-GCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.