miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 124079 0.66 0.522113
Target:  5'- gGAggaGGCGgCGCCuGCGCCCCgacGGCcCa -3'
miRNA:   3'- gCUag-CUGCgGCGG-CGCGGGG---CCGaG- -5'
5322 3' -64.5 NC_001798.1 + 47922 0.66 0.522113
Target:  5'- aCGcgCGggGCGCCuaaggccuCCGCGaCCCCGGCg- -3'
miRNA:   3'- -GCuaGC--UGCGGc-------GGCGC-GGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 26220 0.66 0.522113
Target:  5'- gCGggCGACGCCaUgGCG-CCCGGCg- -3'
miRNA:   3'- -GCuaGCUGCGGcGgCGCgGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 54438 0.66 0.522113
Target:  5'- gGcgCGACaacgcacccCCGCCGCuCCCCcgGGCUCg -3'
miRNA:   3'- gCuaGCUGc--------GGCGGCGcGGGG--CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 80771 0.67 0.512938
Target:  5'- ---cUGACGCUcuucgacUCGCGCCCCGGCg- -3'
miRNA:   3'- gcuaGCUGCGGc------GGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 91480 0.67 0.512938
Target:  5'- gGAU-GGCGgUGCCGauguuccCCCCGGCUCu -3'
miRNA:   3'- gCUAgCUGCgGCGGCgc-----GGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 23004 0.67 0.512938
Target:  5'- gCGGaCGGCGUCGUCuCGCCgCGGCa- -3'
miRNA:   3'- -GCUaGCUGCGGCGGcGCGGgGCCGag -5'
5322 3' -64.5 NC_001798.1 + 143294 0.67 0.512938
Target:  5'- aCGua-GGgGCCGuCCGC-CCCCGGCg- -3'
miRNA:   3'- -GCuagCUgCGGC-GGCGcGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 153404 0.67 0.512938
Target:  5'- gCGGUCGGC-CCGCuCGCGCgCCCaGGa-- -3'
miRNA:   3'- -GCUAGCUGcGGCG-GCGCG-GGG-CCgag -5'
5322 3' -64.5 NC_001798.1 + 47653 0.67 0.50383
Target:  5'- cCGcgCGACGacuuCCGCCGCGgCgCUGGCcCg -3'
miRNA:   3'- -GCuaGCUGC----GGCGGCGCgG-GGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 7865 0.67 0.50383
Target:  5'- -aGUCcuCGCCGCUGUgGCCCUGGCg- -3'
miRNA:   3'- gcUAGcuGCGGCGGCG-CGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 37503 0.67 0.50383
Target:  5'- aCGcgCGGC-CCGCUGUGCgUCGaGCUCc -3'
miRNA:   3'- -GCuaGCUGcGGCGGCGCGgGGC-CGAG- -5'
5322 3' -64.5 NC_001798.1 + 24270 0.67 0.50383
Target:  5'- uGcgCcGCGCCuaCGCGCCCCuGCUg -3'
miRNA:   3'- gCuaGcUGCGGcgGCGCGGGGcCGAg -5'
5322 3' -64.5 NC_001798.1 + 81742 0.67 0.50383
Target:  5'- aGGUCccgccgGACGCgugccaaauCGCgCGCGCCCCGGgcCUCc -3'
miRNA:   3'- gCUAG------CUGCG---------GCG-GCGCGGGGCC--GAG- -5'
5322 3' -64.5 NC_001798.1 + 48159 0.67 0.50383
Target:  5'- gCGGUCgGGCGCCuggcgGCCaCGCacgCCCGGCUg -3'
miRNA:   3'- -GCUAG-CUGCGG-----CGGcGCG---GGGCCGAg -5'
5322 3' -64.5 NC_001798.1 + 115521 0.67 0.50383
Target:  5'- gGggCGuACGUCGCgGCcccggccgGCCCCGGCg- -3'
miRNA:   3'- gCuaGC-UGCGGCGgCG--------CGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 134162 0.67 0.502922
Target:  5'- cCGGggcCGuCGCgGCCGCccgcgccgcgacgGCCCCGGC-Cg -3'
miRNA:   3'- -GCUa--GCuGCGgCGGCG-------------CGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 117547 0.67 0.501111
Target:  5'- cCGGUCuuuggcugcgcccaGGUGCCGCgGCGCgCCGGCa- -3'
miRNA:   3'- -GCUAG--------------CUGCGGCGgCGCGgGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 134302 0.67 0.494792
Target:  5'- --uUCGuC-CCGCUGCGCCUgGGCUg -3'
miRNA:   3'- gcuAGCuGcGGCGGCGCGGGgCCGAg -5'
5322 3' -64.5 NC_001798.1 + 39830 0.67 0.494792
Target:  5'- gGAUCGuCGgcuccCCGCCGCGCugCCgGGCg- -3'
miRNA:   3'- gCUAGCuGC-----GGCGGCGCG--GGgCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.