miRNA display CGI


Results 81 - 100 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 77402 0.68 0.462898
Target:  5'- gGGUCGGCgGCCGCCgaccugguaguccagGCGCgCCgGGCc- -3'
miRNA:   3'- gCUAGCUG-CGGCGG---------------CGCG-GGgCCGag -5'
5322 3' -64.5 NC_001798.1 + 21072 0.68 0.459421
Target:  5'- gGAUCGGgGCC-CCGuCcCCCCGGCcCg -3'
miRNA:   3'- gCUAGCUgCGGcGGC-GcGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 85049 0.68 0.459421
Target:  5'- -cGUCGAgCGCCGCCGUGCgcgaagagucgCCgGGCa- -3'
miRNA:   3'- gcUAGCU-GCGGCGGCGCG-----------GGgCCGag -5'
5322 3' -64.5 NC_001798.1 + 29728 0.68 0.451648
Target:  5'- aGAgaccgCGG-GCCGCCGUcucgagucuacccuaCCCCGGCUCa -3'
miRNA:   3'- gCUa----GCUgCGGCGGCGc--------------GGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 62267 0.68 0.450788
Target:  5'- cCGAUCccaGGC-CCGCCGgGCggCCCGGCg- -3'
miRNA:   3'- -GCUAG---CUGcGGCGGCgCG--GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 24387 0.68 0.450788
Target:  5'- ---cCGcCGCCGCCGcCGCCCCGuuGCcgUCg -3'
miRNA:   3'- gcuaGCuGCGGCGGC-GCGGGGC--CG--AG- -5'
5322 3' -64.5 NC_001798.1 + 83853 0.68 0.450788
Target:  5'- cCGggCGGCGCUGgCGgGCCCgaGGCg- -3'
miRNA:   3'- -GCuaGCUGCGGCgGCgCGGGg-CCGag -5'
5322 3' -64.5 NC_001798.1 + 77259 0.68 0.450788
Target:  5'- -uGUCGGCccugggcgcgGCCGcCCGCGaCCCGGcCUCg -3'
miRNA:   3'- gcUAGCUG----------CGGC-GGCGCgGGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 42848 0.68 0.442246
Target:  5'- ---cUGAacCGCCGCCaGCGCCCCGcGCc- -3'
miRNA:   3'- gcuaGCU--GCGGCGG-CGCGGGGC-CGag -5'
5322 3' -64.5 NC_001798.1 + 106082 0.68 0.442246
Target:  5'- gCGGUCuGGCgGUCGCgGCGaCCCGGCg- -3'
miRNA:   3'- -GCUAG-CUG-CGGCGgCGCgGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 23640 0.68 0.441397
Target:  5'- gCGAcCGcgggccgccuggaGCGCCGCCGgGCCCgcgCGGCg- -3'
miRNA:   3'- -GCUaGC-------------UGCGGCGGCgCGGG---GCCGag -5'
5322 3' -64.5 NC_001798.1 + 68940 0.68 0.433796
Target:  5'- cCGGUCca----GCCGCGCCCCGGCcCg -3'
miRNA:   3'- -GCUAGcugcggCGGCGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 23734 0.68 0.433796
Target:  5'- uCGAgcUgGACGCCGaCGCgGCCuCCGGCg- -3'
miRNA:   3'- -GCU--AgCUGCGGCgGCG-CGG-GGCCGag -5'
5322 3' -64.5 NC_001798.1 + 26410 0.68 0.433796
Target:  5'- uCGAgccCGACGgCGaCGCGCCCCcGCUg -3'
miRNA:   3'- -GCUa--GCUGCgGCgGCGCGGGGcCGAg -5'
5322 3' -64.5 NC_001798.1 + 108666 0.68 0.433796
Target:  5'- aCGGcCGACGCaacgCGCCGC-CCCCGGggCc -3'
miRNA:   3'- -GCUaGCUGCG----GCGGCGcGGGGCCgaG- -5'
5322 3' -64.5 NC_001798.1 + 138402 0.68 0.433796
Target:  5'- cCGcgCGGCGCCaGCCa--CCCCGcGCUCg -3'
miRNA:   3'- -GCuaGCUGCGG-CGGcgcGGGGC-CGAG- -5'
5322 3' -64.5 NC_001798.1 + 1492 0.68 0.433796
Target:  5'- ---aUGGCGUCGcCCGCGCCCgaGGCg- -3'
miRNA:   3'- gcuaGCUGCGGC-GGCGCGGGg-CCGag -5'
5322 3' -64.5 NC_001798.1 + 43088 0.68 0.432956
Target:  5'- uCGggCGcCGCCGCCGCGUCCgcgaccaCGGUc- -3'
miRNA:   3'- -GCuaGCuGCGGCGGCGCGGG-------GCCGag -5'
5322 3' -64.5 NC_001798.1 + 20350 0.68 0.42544
Target:  5'- gCGGUUGGCGCUGCCGgGCg--GGUUCg -3'
miRNA:   3'- -GCUAGCUGCGGCGGCgCGgggCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 53296 0.68 0.42544
Target:  5'- uGAcCGGCGCCGaUCGCaGCgUCCGGCUg -3'
miRNA:   3'- gCUaGCUGCGGC-GGCG-CG-GGGCCGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.