miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5323 3' -53.4 NC_001798.1 + 97215 0.69 0.873658
Target:  5'- gGGUGuGGUUCGggGGGCGGaugcguuccGCGgGGACg -3'
miRNA:   3'- -CCAC-UCAAGCgaUCCGUU---------CGUgCCUG- -5'
5323 3' -53.4 NC_001798.1 + 107516 0.66 0.961523
Target:  5'- gGGUGGGcgugUCGUUGGGCGgcccccGGCcuuugcuuccucGCGGAa -3'
miRNA:   3'- -CCACUCa---AGCGAUCCGU------UCG------------UGCCUg -5'
5323 3' -53.4 NC_001798.1 + 108222 0.73 0.669799
Target:  5'- cGGUGAGggUCGggGGGguGGCcCGGAUg -3'
miRNA:   3'- -CCACUCa-AGCgaUCCguUCGuGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 109476 0.66 0.957851
Target:  5'- cGGUGGGggcCGC--GGaCAAGUcgGCGGACg -3'
miRNA:   3'- -CCACUCaa-GCGauCC-GUUCG--UGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 110123 0.67 0.953946
Target:  5'- cGGUGGGcgCGCccgugGGGCcauuGGGCGCaucGGACc -3'
miRNA:   3'- -CCACUCaaGCGa----UCCG----UUCGUG---CCUG- -5'
5323 3' -53.4 NC_001798.1 + 116345 0.67 0.953946
Target:  5'- cGUGAGUUC-CUGGacgcgcuaugaaGCGGGC-CGGGCc -3'
miRNA:   3'- cCACUCAAGcGAUC------------CGUUCGuGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 116567 0.7 0.816591
Target:  5'- uGGaUGGGgcCGCUGGucgaGCAggaGGCGCGGACu -3'
miRNA:   3'- -CC-ACUCaaGCGAUC----CGU---UCGUGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 117740 0.68 0.901476
Target:  5'- --aGAGUgugGCcGGcGCGAGCGCGGGCc -3'
miRNA:   3'- ccaCUCAag-CGaUC-CGUUCGUGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 118148 0.66 0.968189
Target:  5'- gGGcGGGggCGCgcGGCGgccgGGCGgGGGCg -3'
miRNA:   3'- -CCaCUCaaGCGauCCGU----UCGUgCCUG- -5'
5323 3' -53.4 NC_001798.1 + 118190 0.66 0.968189
Target:  5'- gGGcGGGggCGCgcGGCGgccgGGCGgGGGCg -3'
miRNA:   3'- -CCaCUCaaGCGauCCGU----UCGUgCCUG- -5'
5323 3' -53.4 NC_001798.1 + 118232 0.66 0.968189
Target:  5'- gGGcGGGggCGCgcGGCGgccgGGCGgGGGCg -3'
miRNA:   3'- -CCaCUCaaGCGauCCGU----UCGUgCCUG- -5'
5323 3' -53.4 NC_001798.1 + 120640 0.69 0.873658
Target:  5'- cGUGGGggCGgUGGGC--GUACGGGCc -3'
miRNA:   3'- cCACUCaaGCgAUCCGuuCGUGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 121793 0.67 0.930801
Target:  5'- gGGUGGGagUGggGGGgGGGgACGGACa -3'
miRNA:   3'- -CCACUCaaGCgaUCCgUUCgUGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 123407 0.66 0.964967
Target:  5'- cGGcgGGGggCGCgc-GCAGGCGCGG-Cg -3'
miRNA:   3'- -CCa-CUCaaGCGaucCGUUCGUGCCuG- -5'
5323 3' -53.4 NC_001798.1 + 123818 0.69 0.880962
Target:  5'- cGGUGAGggCgGCggGGGuCGGGCgggggGCGGGCg -3'
miRNA:   3'- -CCACUCaaG-CGa-UCC-GUUCG-----UGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 124235 0.67 0.953137
Target:  5'- gGGUGAGgaggaaGCggaagcgggagggggGGGCGAcgugugugccguguGCACGGACg -3'
miRNA:   3'- -CCACUCaag---CGa--------------UCCGUU--------------CGUGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 126952 1.12 0.00329
Target:  5'- gGGUGAGUUCGCUAGGCAAGCACGGACu -3'
miRNA:   3'- -CCACUCAAGCGAUCCGUUCGUGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 130866 0.69 0.894875
Target:  5'- --gGGGggCGCccgAGGCGgaggaGGCGCGGGCc -3'
miRNA:   3'- ccaCUCaaGCGa--UCCGU-----UCGUGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 139498 0.75 0.596839
Target:  5'- -uUGGGUcCGUUGGGgGGGUACGGGCg -3'
miRNA:   3'- ccACUCAaGCGAUCCgUUCGUGCCUG- -5'
5323 3' -53.4 NC_001798.1 + 139554 0.68 0.907834
Target:  5'- gGGUGGGgggGCU-GGCGAGC-CGGGg -3'
miRNA:   3'- -CCACUCaagCGAuCCGUUCGuGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.