Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 108222 | 0.73 | 0.669799 |
Target: 5'- cGGUGAGggUCGggGGGguGGCcCGGAUg -3' miRNA: 3'- -CCACUCa-AGCgaUCCguUCGuGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 107516 | 0.66 | 0.961523 |
Target: 5'- gGGUGGGcgugUCGUUGGGCGgcccccGGCcuuugcuuccucGCGGAa -3' miRNA: 3'- -CCACUCa---AGCGAUCCGU------UCG------------UGCCUg -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 97215 | 0.69 | 0.873658 |
Target: 5'- gGGUGuGGUUCGggGGGCGGaugcguuccGCGgGGACg -3' miRNA: 3'- -CCAC-UCAAGCgaUCCGUU---------CGUgCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 87142 | 0.66 | 0.964967 |
Target: 5'- cGGacgGAGaccgCGCUccGGCGAGgGCGGAUg -3' miRNA: 3'- -CCa--CUCaa--GCGAu-CCGUUCgUGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 85270 | 0.68 | 0.925431 |
Target: 5'- --cGGGccgUCGCggcgagcgaUGGGCGGGCGCaGGACg -3' miRNA: 3'- ccaCUCa--AGCG---------AUCCGUUCGUG-CCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 75486 | 0.69 | 0.866129 |
Target: 5'- uGGcgGAGUUCGaCgcGGCGGcCGCGGACc -3' miRNA: 3'- -CCa-CUCAAGC-GauCCGUUcGUGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 74818 | 0.68 | 0.901476 |
Target: 5'- -uUGGGUgUCGCUGGGCccAGCugGG-Cu -3' miRNA: 3'- ccACUCA-AGCGAUCCGu-UCGugCCuG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 68923 | 0.67 | 0.930801 |
Target: 5'- cGGggGGGggCGg-GGGCGGGCGgGGGCu -3' miRNA: 3'- -CCa-CUCaaGCgaUCCGUUCGUgCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 68108 | 0.67 | 0.935921 |
Target: 5'- --cGAGUUCGagGGGCGGGUcuguauagcccuGCGGGCc -3' miRNA: 3'- ccaCUCAAGCgaUCCGUUCG------------UGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 61209 | 0.7 | 0.858381 |
Target: 5'- --gGAGUUCGCc-GGCGAGCACcuGGCc -3' miRNA: 3'- ccaCUCAAGCGauCCGUUCGUGc-CUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 48947 | 0.67 | 0.940794 |
Target: 5'- aGGUGAGgaUGCUuGGCcagAAGCGgGGGa -3' miRNA: 3'- -CCACUCaaGCGAuCCG---UUCGUgCCUg -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 25470 | 0.73 | 0.700764 |
Target: 5'- uGGUGAcGUUC-CUcGGCAGGCaccgcGCGGGCg -3' miRNA: 3'- -CCACU-CAAGcGAuCCGUUCG-----UGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 22270 | 0.77 | 0.456959 |
Target: 5'- uGGUGuccguGUaccagUCGCUgGGGCGGGUACGGACu -3' miRNA: 3'- -CCACu----CA-----AGCGA-UCCGUUCGUGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 13190 | 0.66 | 0.970611 |
Target: 5'- gGGUGuucgcGUUCGCggaggagcugcGGCGgcGGCACGcGACg -3' miRNA: 3'- -CCACu----CAAGCGau---------CCGU--UCGUGC-CUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 10190 | 0.71 | 0.779979 |
Target: 5'- cGUGGGggggCGUUcgaaaGGGCGAGgACGGGCg -3' miRNA: 3'- cCACUCaa--GCGA-----UCCGUUCgUGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 7154 | 0.68 | 0.913947 |
Target: 5'- aGGUGAGcUUCuGCUgAGGCG-GCGgGGAg -3' miRNA: 3'- -CCACUC-AAG-CGA-UCCGUuCGUgCCUg -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 6371 | 0.72 | 0.741164 |
Target: 5'- gGGUGAGgaggggcgggCGUggcGGGCAGGUguGCGGGCg -3' miRNA: 3'- -CCACUCaa--------GCGa--UCCGUUCG--UGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 6331 | 0.75 | 0.596839 |
Target: 5'- gGGUGGGcgCcgggGCggGGGUggGCACGGGCg -3' miRNA: 3'- -CCACUCaaG----CGa-UCCGuuCGUGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 5500 | 0.7 | 0.833887 |
Target: 5'- cGG-GGGcgUCGCc-GGCcGGCGCGGGCg -3' miRNA: 3'- -CCaCUCa-AGCGauCCGuUCGUGCCUG- -5' |
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5323 | 3' | -53.4 | NC_001798.1 | + | 4661 | 0.69 | 0.888036 |
Target: 5'- --gGGGggCGagGGGCGAGCGCGGGg -3' miRNA: 3'- ccaCUCaaGCgaUCCGUUCGUGCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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