miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 119642 0.68 0.770085
Target:  5'- aAGGGGGAAGAGAGGGg--GAGGUAg -3'
miRNA:   3'- cUCCCUCUUCUCUUCUgggCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 119982 0.72 0.566017
Target:  5'- gGAGGGAGAAGAaacggaacgcgGAAacgccgccggcgcGGCCCGGGGCc- -3'
miRNA:   3'- -CUCCCUCUUCU-----------CUU-------------CUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 120031 0.69 0.720126
Target:  5'- cGA-GGAGAAGGGAaggggcgagggucGGGCCCGGGaGCGg -3'
miRNA:   3'- -CUcCCUCUUCUCU-------------UCUGGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 120114 0.66 0.886993
Target:  5'- cGGGGGGGggGGGggGAaaUgUGAGGa-- -3'
miRNA:   3'- -CUCCCUCuuCUCuuCU--GgGCUCCgua -5'
5325 3' -56.1 NC_001798.1 + 121043 0.89 0.056065
Target:  5'- gGAGGaGcaGGAAGAGGAGACCCGAGGCAUg -3'
miRNA:   3'- -CUCC-C--UCUUCUCUUCUGGGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 121172 1.06 0.003969
Target:  5'- gGAGGGAGAAGAGAAGACCCGAGGCAUg -3'
miRNA:   3'- -CUCCCUCUUCUCUUCUGGGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 121325 0.66 0.893814
Target:  5'- gGAGGGAGGAGGGggGgggucagccgcACCaccGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCuuC-----------UGGgcuCCGUa -5'
5325 3' -56.1 NC_001798.1 + 121588 0.67 0.833088
Target:  5'- uGGGGGGGAAGGGAGGAggaggagggGGGGCGg -3'
miRNA:   3'- -CUCCCUCUUCUCUUCUggg------CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 122950 0.77 0.309252
Target:  5'- gGAGGGccgggcgcGGAGGGAGGACCCGGGGUc- -3'
miRNA:   3'- -CUCCCu-------CUUCUCUUCUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 124692 0.67 0.824583
Target:  5'- nGGGGGAcaGggGGGGAGACgaGGGGUc- -3'
miRNA:   3'- -CUCCCU--CuuCUCUUCUGggCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 124719 0.8 0.194827
Target:  5'- cGAGGGAGGcAGGGAGGAgCCCGAGaGCGg -3'
miRNA:   3'- -CUCCCUCU-UCUCUUCU-GGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 125068 0.69 0.731115
Target:  5'- -cGGcGGGAGGAGGAGACCCgGAGaGaCAg -3'
miRNA:   3'- cuCC-CUCUUCUCUUCUGGG-CUC-C-GUa -5'
5325 3' -56.1 NC_001798.1 + 126554 0.74 0.440395
Target:  5'- cGAGGGcGggGGGAAGGCgCCgGAGGCc- -3'
miRNA:   3'- -CUCCCuCuuCUCUUCUG-GG-CUCCGua -5'
5325 3' -56.1 NC_001798.1 + 127152 0.68 0.788852
Target:  5'- gGAGGGAcGggGaAGggGGCgCgCGGGGCu- -3'
miRNA:   3'- -CUCCCU-CuuC-UCuuCUG-G-GCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 127551 0.78 0.268365
Target:  5'- gGGGGGAGggGcGGggGAagccCCCGGGGCGg -3'
miRNA:   3'- -CUCCCUCuuC-UCuuCU----GGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 127618 0.66 0.865165
Target:  5'- cAGGaGcGGGAGGGAAGGCaCGGGGCGc -3'
miRNA:   3'- cUCC-C-UCUUCUCUUCUGgGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 130856 0.67 0.824583
Target:  5'- cGAGGcGGAGGAGGcgcGGGCCCGguucgaggccucGGGCGc -3'
miRNA:   3'- -CUCCcUCUUCUCU---UCUGGGC------------UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 133183 0.67 0.857452
Target:  5'- gGGGGGGGggGGGAGGGaa--AGGCAg -3'
miRNA:   3'- -CUCCCUCuuCUCUUCUgggcUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 139707 0.72 0.58753
Target:  5'- -cGGGAGcguGGGGcggauGGGCCCGGGGCGc -3'
miRNA:   3'- cuCCCUCu--UCUCu----UCUGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 139808 0.78 0.281489
Target:  5'- cAGGGGGAuguguuGGGGugugGGGCCCGAGGCAUg -3'
miRNA:   3'- cUCCCUCU------UCUCu---UCUGGGCUCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.