miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 75238 0.68 0.757611
Target:  5'- cGGGGcGAGGcguaucugcgcgccGGcGGAGACCCGGGGCc- -3'
miRNA:   3'- -CUCC-CUCU--------------UCuCUUCUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 75448 0.66 0.886993
Target:  5'- -uGGGcGGuGGAGGAGuuCCGGGGCGc -3'
miRNA:   3'- cuCCC-UCuUCUCUUCugGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 75838 0.66 0.865165
Target:  5'- --cGGAGGucccuGGAGGAGG-CCGAGGCGg -3'
miRNA:   3'- cucCCUCU-----UCUCUUCUgGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 78877 0.68 0.807042
Target:  5'- cGGGGcGAAGAGAugcGGgUCGAGGCGg -3'
miRNA:   3'- cUCCCuCUUCUCUu--CUgGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 80183 0.72 0.536663
Target:  5'- aGGGGGGAcGGAGAAGGCUCG-GGCc- -3'
miRNA:   3'- cUCCCUCU-UCUCUUCUGGGCuCCGua -5'
5325 3' -56.1 NC_001798.1 + 80231 0.72 0.577263
Target:  5'- cGGGGcGAGAucGGggGGCUCGGGGCGc -3'
miRNA:   3'- -CUCC-CUCUucUCuuCUGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 85554 0.67 0.857452
Target:  5'- uGGGGGAGGucGGuGggGugCCGcaGGGCc- -3'
miRNA:   3'- -CUCCCUCU--UCuCuuCugGGC--UCCGua -5'
5325 3' -56.1 NC_001798.1 + 87562 0.72 0.54673
Target:  5'- aGGGGGGAGGAGggGgcggggggacaGCCUGGGGUc- -3'
miRNA:   3'- cUCCCUCUUCUCuuC-----------UGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 88287 0.69 0.721129
Target:  5'- uGGGGGGGAccgGGGGAAGGUCC-AGGCAc -3'
miRNA:   3'- -CUCCCUCU---UCUCUUCUGGGcUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 93576 0.69 0.711065
Target:  5'- aGGGGGGGAAGAGAGagauggucGGCCUGcaccGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCUU--------CUGGGCu---CCGUa -5'
5325 3' -56.1 NC_001798.1 + 93713 0.69 0.731115
Target:  5'- uAGGGGGGccGGggGACCCGAGcCAc -3'
miRNA:   3'- cUCCCUCUucUCuuCUGGGCUCcGUa -5'
5325 3' -56.1 NC_001798.1 + 95407 0.72 0.58753
Target:  5'- gGAGGGGGAAGGGggGuggaaaggaCgGAGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCuuCug-------GgCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 111271 0.68 0.760507
Target:  5'- cGGGGGcGGgcGuGAGGGCcgCCGGGGCAUa -3'
miRNA:   3'- -CUCCC-UCuuCuCUUCUG--GGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 111723 0.66 0.865165
Target:  5'- -cGGGGGGAGcgcGggGcCCCGGGcGCAa -3'
miRNA:   3'- cuCCCUCUUCu--CuuCuGGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 114168 0.67 0.857452
Target:  5'- cGAGGGuGcgu---AGGCCCGAGGCGg -3'
miRNA:   3'- -CUCCCuCuucucuUCUGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 114236 0.8 0.194827
Target:  5'- cGGGGGAGggGcaAGcAGACCCGAGGCc- -3'
miRNA:   3'- -CUCCCUCuuC--UCuUCUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 114977 0.68 0.760507
Target:  5'- cGGGGGGAAGccGAccgccuGGuCCCGAGGCGc -3'
miRNA:   3'- cUCCCUCUUCu-CU------UCuGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 115296 0.66 0.871924
Target:  5'- cAGGGAcagcgccaucagcGGAGGGggGGCCUGGcGCGUg -3'
miRNA:   3'- cUCCCU-------------CUUCUCuuCUGGGCUcCGUA- -5'
5325 3' -56.1 NC_001798.1 + 118046 0.7 0.649563
Target:  5'- cAGGG-GAGGGGAGGACgCGGGGgAg -3'
miRNA:   3'- cUCCCuCUUCUCUUCUGgGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 119616 0.69 0.721129
Target:  5'- aGGGGAGAGGAGAAGggcGCgCCGGuGCGc -3'
miRNA:   3'- cUCCCUCUUCUCUUC---UG-GGCUcCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.