miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 4020 0.71 0.628854
Target:  5'- cAGGGGGAAGAGAGGccACUCucGGCAc -3'
miRNA:   3'- cUCCCUCUUCUCUUC--UGGGcuCCGUa -5'
5325 3' -56.1 NC_001798.1 + 118046 0.7 0.649563
Target:  5'- cAGGG-GAGGGGAGGACgCGGGGgAg -3'
miRNA:   3'- cUCCCuCUUCUCUUCUGgGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 8337 0.7 0.670215
Target:  5'- aGAGGGGGGAcGGGgcGAgCCG-GGCAg -3'
miRNA:   3'- -CUCCCUCUU-CUCuuCUgGGCuCCGUa -5'
5325 3' -56.1 NC_001798.1 + 52859 0.7 0.680498
Target:  5'- cGGGGGAGGgcugauguagcgGGGGAgcgGGACCgGGGGUAa -3'
miRNA:   3'- -CUCCCUCU------------UCUCU---UCUGGgCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 152205 0.7 0.689717
Target:  5'- cGGGGGgcgcggcccccgcGGGAGGGgcGGCCgCGGGGCGg -3'
miRNA:   3'- -CUCCC-------------UCUUCUCuuCUGG-GCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 93576 0.69 0.711065
Target:  5'- aGGGGGGGAAGAGAGagauggucGGCCUGcaccGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCUU--------CUGGGCu---CCGUa -5'
5325 3' -56.1 NC_001798.1 + 120031 0.69 0.720126
Target:  5'- cGA-GGAGAAGGGAaggggcgagggucGGGCCCGGGaGCGg -3'
miRNA:   3'- -CUcCCUCUUCUCU-------------UCUGGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 119616 0.69 0.721129
Target:  5'- aGGGGAGAGGAGAAGggcGCgCCGGuGCGc -3'
miRNA:   3'- cUCCCUCUUCUCUUC---UG-GGCUcCGUa -5'
5325 3' -56.1 NC_001798.1 + 88287 0.69 0.721129
Target:  5'- uGGGGGGGAccgGGGGAAGGUCC-AGGCAc -3'
miRNA:   3'- -CUCCCUCU---UCUCUUCUGGGcUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 93713 0.69 0.731115
Target:  5'- uAGGGGGGccGGggGACCCGAGcCAc -3'
miRNA:   3'- cUCCCUCUucUCuuCUGGGCUCcGUa -5'
5325 3' -56.1 NC_001798.1 + 2226 0.69 0.731115
Target:  5'- cGGGGGcGGAGGGAGGGaaucccccccuCUCGGGGCGg -3'
miRNA:   3'- -CUCCCuCUUCUCUUCU-----------GGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 125068 0.69 0.731115
Target:  5'- -cGGcGGGAGGAGGAGACCCgGAGaGaCAg -3'
miRNA:   3'- cuCC-CUCUUCUCUUCUGGG-CUC-C-GUa -5'
5325 3' -56.1 NC_001798.1 + 46115 0.69 0.741013
Target:  5'- cGGGGAGAcgacGGGgcGACCgaGAGGCAc -3'
miRNA:   3'- cUCCCUCUu---CUCuuCUGGg-CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 143597 0.69 0.750813
Target:  5'- gGGGGGGGggGGGggGAaauaaCCacgaugGGGGCGg -3'
miRNA:   3'- -CUCCCUCuuCUCuuCUg----GG------CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 75238 0.68 0.757611
Target:  5'- cGGGGcGAGGcguaucugcgcgccGGcGGAGACCCGGGGCc- -3'
miRNA:   3'- -CUCC-CUCU--------------UCuCUUCUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 154710 0.68 0.760507
Target:  5'- cGGGGGGGGuguuuuuugGGGGggGGCgCGaAGGCGg -3'
miRNA:   3'- -CUCCCUCU---------UCUCuuCUGgGC-UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 372 0.68 0.760507
Target:  5'- cGGGGGGGGuguuuuuugGGGGggGGCgCGaAGGCGg -3'
miRNA:   3'- -CUCCCUCU---------UCUCuuCUGgGC-UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 114977 0.68 0.760507
Target:  5'- cGGGGGGAAGccGAccgccuGGuCCCGAGGCGc -3'
miRNA:   3'- cUCCCUCUUCu-CU------UCuGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 111271 0.68 0.760507
Target:  5'- cGGGGGcGGgcGuGAGGGCcgCCGGGGCAUa -3'
miRNA:   3'- -CUCCC-UCuuCuCUUCUG--GGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 119642 0.68 0.770085
Target:  5'- aAGGGGGAAGAGAGGGg--GAGGUAg -3'
miRNA:   3'- cUCCCUCUUCUCUUCUgggCUCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.