miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 121172 1.06 0.003969
Target:  5'- gGAGGGAGAAGAGAAGACCCGAGGCAUg -3'
miRNA:   3'- -CUCCCUCUUCUCUUCUGGGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 121043 0.89 0.056065
Target:  5'- gGAGGaGcaGGAAGAGGAGACCCGAGGCAUg -3'
miRNA:   3'- -CUCC-C--UCUUCUCUUCUGGGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 124719 0.8 0.194827
Target:  5'- cGAGGGAGGcAGGGAGGAgCCCGAGaGCGg -3'
miRNA:   3'- -CUCCCUCU-UCUCUUCU-GGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 114236 0.8 0.194827
Target:  5'- cGGGGGAGggGcaAGcAGACCCGAGGCc- -3'
miRNA:   3'- -CUCCCUCuuC--UCuUCUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 17272 0.79 0.243605
Target:  5'- cGGGGGuuGggGAGggGGgCCGGGGCAg -3'
miRNA:   3'- -CUCCCu-CuuCUCuuCUgGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 127551 0.78 0.268365
Target:  5'- gGGGGGAGggGcGGggGAagccCCCGGGGCGg -3'
miRNA:   3'- -CUCCCUCuuC-UCuuCU----GGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 139808 0.78 0.281489
Target:  5'- cAGGGGGAuguguuGGGGugugGGGCCCGAGGCAUg -3'
miRNA:   3'- cUCCCUCU------UCUCu---UCUGGGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 122950 0.77 0.309252
Target:  5'- gGAGGGccgggcgcGGAGGGAGGACCCGGGGUc- -3'
miRNA:   3'- -CUCCCu-------CUUCUCUUCUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 2923 0.75 0.387552
Target:  5'- cGGGGGGGAuuuAGAGGGCgCGGGGCGUg -3'
miRNA:   3'- -CUCCCUCUuc-UCUUCUGgGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 126554 0.74 0.440395
Target:  5'- cGAGGGcGggGGGAAGGCgCCgGAGGCc- -3'
miRNA:   3'- -CUCCCuCuuCUCUUCUG-GG-CUCCGua -5'
5325 3' -56.1 NC_001798.1 + 53505 0.73 0.48741
Target:  5'- aAGGGAGggGAGggGAgCUG-GGCu- -3'
miRNA:   3'- cUCCCUCuuCUCuuCUgGGCuCCGua -5'
5325 3' -56.1 NC_001798.1 + 52795 0.73 0.497099
Target:  5'- uGGGGGGAccgccccggauAGAGGAGGCCCcgggGGGGCGa -3'
miRNA:   3'- cUCCCUCU-----------UCUCUUCUGGG----CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 80183 0.72 0.536663
Target:  5'- aGGGGGGAcGGAGAAGGCUCG-GGCc- -3'
miRNA:   3'- cUCCCUCU-UCUCUUCUGGGCuCCGua -5'
5325 3' -56.1 NC_001798.1 + 87562 0.72 0.54673
Target:  5'- aGGGGGGAGGAGggGgcggggggacaGCCUGGGGUc- -3'
miRNA:   3'- cUCCCUCUUCUCuuC-----------UGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 8683 0.72 0.556857
Target:  5'- gGGGGGAacacGggGGGGAGGggUCCGGGGCGa -3'
miRNA:   3'- -CUCCCU----CuuCUCUUCU--GGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 119982 0.72 0.566017
Target:  5'- gGAGGGAGAAGAaacggaacgcgGAAacgccgccggcgcGGCCCGGGGCc- -3'
miRNA:   3'- -CUCCCUCUUCU-----------CUU-------------CUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 4202 0.72 0.567037
Target:  5'- aGGaGGAGAcaaaGGAGAGcGGCCCGGGGCc- -3'
miRNA:   3'- cUC-CCUCU----UCUCUU-CUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 80231 0.72 0.577263
Target:  5'- cGGGGcGAGAucGGggGGCUCGGGGCGc -3'
miRNA:   3'- -CUCC-CUCUucUCuuCUGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 95407 0.72 0.58753
Target:  5'- gGAGGGGGAAGGGggGuggaaaggaCgGAGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCuuCug-------GgCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 139707 0.72 0.58753
Target:  5'- -cGGGAGcguGGGGcggauGGGCCCGGGGCGc -3'
miRNA:   3'- cuCCCUCu--UCUCu----UCUGGGCUCCGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.