miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 57254 0.66 0.893814
Target:  5'- cGGGGGGGccGAGGAGgaagaGCCCcGGGCc- -3'
miRNA:   3'- -CUCCCUCuuCUCUUC-----UGGGcUCCGua -5'
5325 3' -56.1 NC_001798.1 + 127618 0.66 0.865165
Target:  5'- cAGGaGcGGGAGGGAAGGCaCGGGGCGc -3'
miRNA:   3'- cUCC-C-UCUUCUCUUCUGgGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 111723 0.66 0.865165
Target:  5'- -cGGGGGGAGcgcGggGcCCCGGGcGCAa -3'
miRNA:   3'- cuCCCUCUUCu--CuuCuGGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 75838 0.66 0.865165
Target:  5'- --cGGAGGucccuGGAGGAGG-CCGAGGCGg -3'
miRNA:   3'- cucCCUCU-----UCUCUUCUgGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 115296 0.66 0.871924
Target:  5'- cAGGGAcagcgccaucagcGGAGGGggGGCCUGGcGCGUg -3'
miRNA:   3'- cUCCCU-------------CUUCUCuuCUGGGCUcCGUA- -5'
5325 3' -56.1 NC_001798.1 + 150855 0.66 0.879941
Target:  5'- cGGGGGcGggGGGccGGCCCcGGGCc- -3'
miRNA:   3'- -CUCCCuCuuCUCuuCUGGGcUCCGua -5'
5325 3' -56.1 NC_001798.1 + 141687 0.66 0.879941
Target:  5'- aGGGGGAGAgcguacuugcaGGAGGcgcGGGCCCGGuGCu- -3'
miRNA:   3'- -CUCCCUCU-----------UCUCU---UCUGGGCUcCGua -5'
5325 3' -56.1 NC_001798.1 + 120114 0.66 0.886993
Target:  5'- cGGGGGGGggGGGggGAaaUgUGAGGa-- -3'
miRNA:   3'- -CUCCCUCuuCUCuuCU--GgGCUCCgua -5'
5325 3' -56.1 NC_001798.1 + 75448 0.66 0.886993
Target:  5'- -uGGGcGGuGGAGGAGuuCCGGGGCGc -3'
miRNA:   3'- cuCCC-UCuUCUCUUCugGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 45560 0.66 0.886993
Target:  5'- --cGGAGuuuuuGGGGGAGGACCCG-GGCu- -3'
miRNA:   3'- cucCCUC-----UUCUCUUCUGGGCuCCGua -5'
5325 3' -56.1 NC_001798.1 + 121325 0.66 0.893814
Target:  5'- gGAGGGAGGAGGGggGgggucagccgcACCaccGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCuuC-----------UGGgcuCCGUa -5'
5325 3' -56.1 NC_001798.1 + 85554 0.67 0.857452
Target:  5'- uGGGGGAGGucGGuGggGugCCGcaGGGCc- -3'
miRNA:   3'- -CUCCCUCU--UCuCuuCugGGC--UCCGua -5'
5325 3' -56.1 NC_001798.1 + 114168 0.67 0.857452
Target:  5'- cGAGGGuGcgu---AGGCCCGAGGCGg -3'
miRNA:   3'- -CUCCCuCuucucuUCUGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 133183 0.67 0.857452
Target:  5'- gGGGGGGGggGGGAGGGaa--AGGCAg -3'
miRNA:   3'- -CUCCCUCuuCUCUUCUgggcUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 4662 0.67 0.841407
Target:  5'- -uGGGGGgcGAGggGcgaGCgCGGGGCGg -3'
miRNA:   3'- cuCCCUCuuCUCuuC---UGgGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 53750 0.67 0.833088
Target:  5'- cGGGGAGggGgaGGAAGGCgCGgagggGGGCGg -3'
miRNA:   3'- cUCCCUCuuC--UCUUCUGgGC-----UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 54010 0.67 0.833088
Target:  5'- cGAGGG-GAu-GGggGACuuGGGGCGc -3'
miRNA:   3'- -CUCCCuCUucUCuuCUGggCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 121588 0.67 0.833088
Target:  5'- uGGGGGGGAAGGGAGGAggaggagggGGGGCGg -3'
miRNA:   3'- -CUCCCUCUUCUCUUCUggg------CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 124692 0.67 0.824583
Target:  5'- nGGGGGAcaGggGGGGAGACgaGGGGUc- -3'
miRNA:   3'- -CUCCCU--CuuCUCUUCUGggCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 130856 0.67 0.824583
Target:  5'- cGAGGcGGAGGAGGcgcGGGCCCGguucgaggccucGGGCGc -3'
miRNA:   3'- -CUCCcUCUUCUCU---UCUGGGC------------UCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.