Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5325 | 3' | -56.1 | NC_001798.1 | + | 121172 | 1.06 | 0.003969 |
Target: 5'- gGAGGGAGAAGAGAAGACCCGAGGCAUg -3' miRNA: 3'- -CUCCCUCUUCUCUUCUGGGCUCCGUA- -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 121043 | 0.89 | 0.056065 |
Target: 5'- gGAGGaGcaGGAAGAGGAGACCCGAGGCAUg -3' miRNA: 3'- -CUCC-C--UCUUCUCUUCUGGGCUCCGUA- -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 114236 | 0.8 | 0.194827 |
Target: 5'- cGGGGGAGggGcaAGcAGACCCGAGGCc- -3' miRNA: 3'- -CUCCCUCuuC--UCuUCUGGGCUCCGua -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 124719 | 0.8 | 0.194827 |
Target: 5'- cGAGGGAGGcAGGGAGGAgCCCGAGaGCGg -3' miRNA: 3'- -CUCCCUCU-UCUCUUCU-GGGCUC-CGUa -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 17272 | 0.79 | 0.243605 |
Target: 5'- cGGGGGuuGggGAGggGGgCCGGGGCAg -3' miRNA: 3'- -CUCCCu-CuuCUCuuCUgGGCUCCGUa -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 139808 | 0.78 | 0.281489 |
Target: 5'- cAGGGGGAuguguuGGGGugugGGGCCCGAGGCAUg -3' miRNA: 3'- cUCCCUCU------UCUCu---UCUGGGCUCCGUA- -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 127551 | 0.78 | 0.268365 |
Target: 5'- gGGGGGAGggGcGGggGAagccCCCGGGGCGg -3' miRNA: 3'- -CUCCCUCuuC-UCuuCU----GGGCUCCGUa -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 122950 | 0.77 | 0.309252 |
Target: 5'- gGAGGGccgggcgcGGAGGGAGGACCCGGGGUc- -3' miRNA: 3'- -CUCCCu-------CUUCUCUUCUGGGCUCCGua -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 2923 | 0.75 | 0.387552 |
Target: 5'- cGGGGGGGAuuuAGAGGGCgCGGGGCGUg -3' miRNA: 3'- -CUCCCUCUuc-UCUUCUGgGCUCCGUA- -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 126554 | 0.74 | 0.440395 |
Target: 5'- cGAGGGcGggGGGAAGGCgCCgGAGGCc- -3' miRNA: 3'- -CUCCCuCuuCUCUUCUG-GG-CUCCGua -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 53505 | 0.73 | 0.48741 |
Target: 5'- aAGGGAGggGAGggGAgCUG-GGCu- -3' miRNA: 3'- cUCCCUCuuCUCuuCUgGGCuCCGua -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 52795 | 0.73 | 0.497099 |
Target: 5'- uGGGGGGAccgccccggauAGAGGAGGCCCcgggGGGGCGa -3' miRNA: 3'- cUCCCUCU-----------UCUCUUCUGGG----CUCCGUa -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 87562 | 0.72 | 0.54673 |
Target: 5'- aGGGGGGAGGAGggGgcggggggacaGCCUGGGGUc- -3' miRNA: 3'- cUCCCUCUUCUCuuC-----------UGGGCUCCGua -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 139707 | 0.72 | 0.58753 |
Target: 5'- -cGGGAGcguGGGGcggauGGGCCCGGGGCGc -3' miRNA: 3'- cuCCCUCu--UCUCu----UCUGGGCUCCGUa -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 95407 | 0.72 | 0.58753 |
Target: 5'- gGAGGGGGAAGGGggGuggaaaggaCgGAGGCGc -3' miRNA: 3'- -CUCCCUCUUCUCuuCug-------GgCUCCGUa -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 80231 | 0.72 | 0.577263 |
Target: 5'- cGGGGcGAGAucGGggGGCUCGGGGCGc -3' miRNA: 3'- -CUCC-CUCUucUCuuCUGGGCUCCGUa -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 8683 | 0.72 | 0.556857 |
Target: 5'- gGGGGGAacacGggGGGGAGGggUCCGGGGCGa -3' miRNA: 3'- -CUCCCU----CuuCUCUUCU--GGGCUCCGUa -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 80183 | 0.72 | 0.536663 |
Target: 5'- aGGGGGGAcGGAGAAGGCUCG-GGCc- -3' miRNA: 3'- cUCCCUCU-UCUCUUCUGGGCuCCGua -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 4202 | 0.72 | 0.567037 |
Target: 5'- aGGaGGAGAcaaaGGAGAGcGGCCCGGGGCc- -3' miRNA: 3'- cUC-CCUCU----UCUCUU-CUGGGCUCCGua -5' |
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5325 | 3' | -56.1 | NC_001798.1 | + | 119982 | 0.72 | 0.566017 |
Target: 5'- gGAGGGAGAAGAaacggaacgcgGAAacgccgccggcgcGGCCCGGGGCc- -3' miRNA: 3'- -CUCCCUCUUCU-----------CUU-------------CUGGGCUCCGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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