miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 372 0.68 0.760507
Target:  5'- cGGGGGGGGuguuuuuugGGGGggGGCgCGaAGGCGg -3'
miRNA:   3'- -CUCCCUCU---------UCUCuuCUGgGC-UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 2226 0.69 0.731115
Target:  5'- cGGGGGcGGAGGGAGGGaaucccccccuCUCGGGGCGg -3'
miRNA:   3'- -CUCCCuCUUCUCUUCU-----------GGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 2572 0.68 0.788852
Target:  5'- cGGGGAaaaGggGGGGccugAGACCCGGGGg-- -3'
miRNA:   3'- cUCCCU---CuuCUCU----UCUGGGCUCCgua -5'
5325 3' -56.1 NC_001798.1 + 2923 0.75 0.387552
Target:  5'- cGGGGGGGAuuuAGAGGGCgCGGGGCGUg -3'
miRNA:   3'- -CUCCCUCUuc-UCUUCUGgGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 4020 0.71 0.628854
Target:  5'- cAGGGGGAAGAGAGGccACUCucGGCAc -3'
miRNA:   3'- cUCCCUCUUCUCUUC--UGGGcuCCGUa -5'
5325 3' -56.1 NC_001798.1 + 4202 0.72 0.567037
Target:  5'- aGGaGGAGAcaaaGGAGAGcGGCCCGGGGCc- -3'
miRNA:   3'- cUC-CCUCU----UCUCUU-CUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 4627 0.68 0.779536
Target:  5'- aGAGGcGGAGGAcGAGGCCgCGGGGCc- -3'
miRNA:   3'- -CUCCcUCUUCUcUUCUGG-GCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 4662 0.67 0.841407
Target:  5'- -uGGGGGgcGAGggGcgaGCgCGGGGCGg -3'
miRNA:   3'- cuCCCUCuuCUCuuC---UGgGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 8337 0.7 0.670215
Target:  5'- aGAGGGGGGAcGGGgcGAgCCG-GGCAg -3'
miRNA:   3'- -CUCCCUCUU-CUCuuCUgGGCuCCGUa -5'
5325 3' -56.1 NC_001798.1 + 8683 0.72 0.556857
Target:  5'- gGGGGGAacacGggGGGGAGGggUCCGGGGCGa -3'
miRNA:   3'- -CUCCCU----CuuCUCUUCU--GGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 17272 0.79 0.243605
Target:  5'- cGGGGGuuGggGAGggGGgCCGGGGCAg -3'
miRNA:   3'- -CUCCCu-CuuCUCuuCUgGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 45560 0.66 0.886993
Target:  5'- --cGGAGuuuuuGGGGGAGGACCCG-GGCu- -3'
miRNA:   3'- cucCCUC-----UUCUCUUCUGGGCuCCGua -5'
5325 3' -56.1 NC_001798.1 + 46115 0.69 0.741013
Target:  5'- cGGGGAGAcgacGGGgcGACCgaGAGGCAc -3'
miRNA:   3'- cUCCCUCUu---CUCuuCUGGg-CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 52795 0.73 0.497099
Target:  5'- uGGGGGGAccgccccggauAGAGGAGGCCCcgggGGGGCGa -3'
miRNA:   3'- cUCCCUCU-----------UCUCUUCUGGG----CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 52859 0.7 0.680498
Target:  5'- cGGGGGAGGgcugauguagcgGGGGAgcgGGACCgGGGGUAa -3'
miRNA:   3'- -CUCCCUCU------------UCUCU---UCUGGgCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 53505 0.73 0.48741
Target:  5'- aAGGGAGggGAGggGAgCUG-GGCu- -3'
miRNA:   3'- cUCCCUCuuCUCuuCUgGGCuCCGua -5'
5325 3' -56.1 NC_001798.1 + 53750 0.67 0.833088
Target:  5'- cGGGGAGggGgaGGAAGGCgCGgagggGGGCGg -3'
miRNA:   3'- cUCCCUCuuC--UCUUCUGgGC-----UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 54010 0.67 0.833088
Target:  5'- cGAGGG-GAu-GGggGACuuGGGGCGc -3'
miRNA:   3'- -CUCCCuCUucUCuuCUGggCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 57219 0.68 0.779536
Target:  5'- --cGGAGGAGGGggGG-CgGAGGCGUg -3'
miRNA:   3'- cucCCUCUUCUCuuCUgGgCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 57254 0.66 0.893814
Target:  5'- cGGGGGGGccGAGGAGgaagaGCCCcGGGCc- -3'
miRNA:   3'- -CUCCCUCuuCUCUUC-----UGGGcUCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.