miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 154710 0.68 0.760507
Target:  5'- cGGGGGGGGuguuuuuugGGGGggGGCgCGaAGGCGg -3'
miRNA:   3'- -CUCCCUCU---------UCUCuuCUGgGC-UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 152205 0.7 0.689717
Target:  5'- cGGGGGgcgcggcccccgcGGGAGGGgcGGCCgCGGGGCGg -3'
miRNA:   3'- -CUCCC-------------UCUUCUCuuCUGG-GCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 150855 0.66 0.879941
Target:  5'- cGGGGGcGggGGGccGGCCCcGGGCc- -3'
miRNA:   3'- -CUCCCuCuuCUCuuCUGGGcUCCGua -5'
5325 3' -56.1 NC_001798.1 + 148496 0.68 0.798024
Target:  5'- cGGGGGAcGggGGGAcGGGCCgGGGGgAc -3'
miRNA:   3'- -CUCCCU-CuuCUCU-UCUGGgCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 148220 0.68 0.807042
Target:  5'- cGGGGGGAcGGGggGACgggCCGGGGgGa -3'
miRNA:   3'- cUCCCUCUuCUCuuCUG---GGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 148178 0.68 0.807042
Target:  5'- cGGGGGGAcGGGggGACgggCCGGGGgGa -3'
miRNA:   3'- cUCCCUCUuCUCuuCUG---GGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 148136 0.68 0.807042
Target:  5'- cGGGGGGAcGGGggGACgggCCGGGGgGa -3'
miRNA:   3'- cUCCCUCUuCUCuuCUG---GGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 147949 0.68 0.807042
Target:  5'- aAGGGAac-GGGAGGACCgaGAGGCGg -3'
miRNA:   3'- cUCCCUcuuCUCUUCUGGg-CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 145333 0.67 0.81502
Target:  5'- gGAGGGAGAgucgggucucuccGGAGGguccugccacagGGACCCGucGCGc -3'
miRNA:   3'- -CUCCCUCU-------------UCUCU------------UCUGGGCucCGUa -5'
5325 3' -56.1 NC_001798.1 + 143597 0.69 0.750813
Target:  5'- gGGGGGGGggGGGggGAaauaaCCacgaugGGGGCGg -3'
miRNA:   3'- -CUCCCUCuuCUCuuCUg----GG------CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 141687 0.66 0.879941
Target:  5'- aGGGGGAGAgcguacuugcaGGAGGcgcGGGCCCGGuGCu- -3'
miRNA:   3'- -CUCCCUCU-----------UCUCU---UCUGGGCUcCGua -5'
5325 3' -56.1 NC_001798.1 + 139808 0.78 0.281489
Target:  5'- cAGGGGGAuguguuGGGGugugGGGCCCGAGGCAUg -3'
miRNA:   3'- cUCCCUCU------UCUCu---UCUGGGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 139707 0.72 0.58753
Target:  5'- -cGGGAGcguGGGGcggauGGGCCCGGGGCGc -3'
miRNA:   3'- cuCCCUCu--UCUCu----UCUGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 133183 0.67 0.857452
Target:  5'- gGGGGGGGggGGGAGGGaa--AGGCAg -3'
miRNA:   3'- -CUCCCUCuuCUCUUCUgggcUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 130856 0.67 0.824583
Target:  5'- cGAGGcGGAGGAGGcgcGGGCCCGguucgaggccucGGGCGc -3'
miRNA:   3'- -CUCCcUCUUCUCU---UCUGGGC------------UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 127618 0.66 0.865165
Target:  5'- cAGGaGcGGGAGGGAAGGCaCGGGGCGc -3'
miRNA:   3'- cUCC-C-UCUUCUCUUCUGgGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 127551 0.78 0.268365
Target:  5'- gGGGGGAGggGcGGggGAagccCCCGGGGCGg -3'
miRNA:   3'- -CUCCCUCuuC-UCuuCU----GGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 127152 0.68 0.788852
Target:  5'- gGAGGGAcGggGaAGggGGCgCgCGGGGCu- -3'
miRNA:   3'- -CUCCCU-CuuC-UCuuCUG-G-GCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 126554 0.74 0.440395
Target:  5'- cGAGGGcGggGGGAAGGCgCCgGAGGCc- -3'
miRNA:   3'- -CUCCCuCuuCUCUUCUG-GG-CUCCGua -5'
5325 3' -56.1 NC_001798.1 + 125068 0.69 0.731115
Target:  5'- -cGGcGGGAGGAGGAGACCCgGAGaGaCAg -3'
miRNA:   3'- cuCC-CUCUUCUCUUCUGGG-CUC-C-GUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.