miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 145333 0.67 0.81502
Target:  5'- gGAGGGAGAgucgggucucuccGGAGGguccugccacagGGACCCGucGCGc -3'
miRNA:   3'- -CUCCCUCU-------------UCUCU------------UCUGGGCucCGUa -5'
5325 3' -56.1 NC_001798.1 + 78877 0.68 0.807042
Target:  5'- cGGGGcGAAGAGAugcGGgUCGAGGCGg -3'
miRNA:   3'- cUCCCuCUUCUCUu--CUgGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 147949 0.68 0.807042
Target:  5'- aAGGGAac-GGGAGGACCgaGAGGCGg -3'
miRNA:   3'- cUCCCUcuuCUCUUCUGGg-CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 148136 0.68 0.807042
Target:  5'- cGGGGGGAcGGGggGACgggCCGGGGgGa -3'
miRNA:   3'- cUCCCUCUuCUCuuCUG---GGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 148178 0.68 0.807042
Target:  5'- cGGGGGGAcGGGggGACgggCCGGGGgGa -3'
miRNA:   3'- cUCCCUCUuCUCuuCUG---GGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 148220 0.68 0.807042
Target:  5'- cGGGGGGAcGGGggGACgggCCGGGGgGa -3'
miRNA:   3'- cUCCCUCUuCUCuuCUG---GGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 148496 0.68 0.798024
Target:  5'- cGGGGGAcGggGGGAcGGGCCgGGGGgAc -3'
miRNA:   3'- -CUCCCU-CuuCUCU-UCUGGgCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 2572 0.68 0.788852
Target:  5'- cGGGGAaaaGggGGGGccugAGACCCGGGGg-- -3'
miRNA:   3'- cUCCCU---CuuCUCU----UCUGGGCUCCgua -5'
5325 3' -56.1 NC_001798.1 + 127152 0.68 0.788852
Target:  5'- gGAGGGAcGggGaAGggGGCgCgCGGGGCu- -3'
miRNA:   3'- -CUCCCU-CuuC-UCuuCUG-G-GCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 57219 0.68 0.779536
Target:  5'- --cGGAGGAGGGggGG-CgGAGGCGUg -3'
miRNA:   3'- cucCCUCUUCUCuuCUgGgCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 4627 0.68 0.779536
Target:  5'- aGAGGcGGAGGAcGAGGCCgCGGGGCc- -3'
miRNA:   3'- -CUCCcUCUUCUcUUCUGG-GCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 119642 0.68 0.770085
Target:  5'- aAGGGGGAAGAGAGGGg--GAGGUAg -3'
miRNA:   3'- cUCCCUCUUCUCUUCUgggCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 111271 0.68 0.760507
Target:  5'- cGGGGGcGGgcGuGAGGGCcgCCGGGGCAUa -3'
miRNA:   3'- -CUCCC-UCuuCuCUUCUG--GGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 114977 0.68 0.760507
Target:  5'- cGGGGGGAAGccGAccgccuGGuCCCGAGGCGc -3'
miRNA:   3'- cUCCCUCUUCu-CU------UCuGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 372 0.68 0.760507
Target:  5'- cGGGGGGGGuguuuuuugGGGGggGGCgCGaAGGCGg -3'
miRNA:   3'- -CUCCCUCU---------UCUCuuCUGgGC-UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 154710 0.68 0.760507
Target:  5'- cGGGGGGGGuguuuuuugGGGGggGGCgCGaAGGCGg -3'
miRNA:   3'- -CUCCCUCU---------UCUCuuCUGgGC-UCCGUa -5'
5325 3' -56.1 NC_001798.1 + 75238 0.68 0.757611
Target:  5'- cGGGGcGAGGcguaucugcgcgccGGcGGAGACCCGGGGCc- -3'
miRNA:   3'- -CUCC-CUCU--------------UCuCUUCUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 143597 0.69 0.750813
Target:  5'- gGGGGGGGggGGGggGAaauaaCCacgaugGGGGCGg -3'
miRNA:   3'- -CUCCCUCuuCUCuuCUg----GG------CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 46115 0.69 0.741013
Target:  5'- cGGGGAGAcgacGGGgcGACCgaGAGGCAc -3'
miRNA:   3'- cUCCCUCUu---CUCuuCUGGg-CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 2226 0.69 0.731115
Target:  5'- cGGGGGcGGAGGGAGGGaaucccccccuCUCGGGGCGg -3'
miRNA:   3'- -CUCCCuCUUCUCUUCU-----------GGGCUCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.