miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 2226 0.69 0.731115
Target:  5'- cGGGGGcGGAGGGAGGGaaucccccccuCUCGGGGCGg -3'
miRNA:   3'- -CUCCCuCUUCUCUUCU-----------GGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 93713 0.69 0.731115
Target:  5'- uAGGGGGGccGGggGACCCGAGcCAc -3'
miRNA:   3'- cUCCCUCUucUCuuCUGGGCUCcGUa -5'
5325 3' -56.1 NC_001798.1 + 119616 0.69 0.721129
Target:  5'- aGGGGAGAGGAGAAGggcGCgCCGGuGCGc -3'
miRNA:   3'- cUCCCUCUUCUCUUC---UG-GGCUcCGUa -5'
5325 3' -56.1 NC_001798.1 + 88287 0.69 0.721129
Target:  5'- uGGGGGGGAccgGGGGAAGGUCC-AGGCAc -3'
miRNA:   3'- -CUCCCUCU---UCUCUUCUGGGcUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 120031 0.69 0.720126
Target:  5'- cGA-GGAGAAGGGAaggggcgagggucGGGCCCGGGaGCGg -3'
miRNA:   3'- -CUcCCUCUUCUCU-------------UCUGGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 93576 0.69 0.711065
Target:  5'- aGGGGGGGAAGAGAGagauggucGGCCUGcaccGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCUU--------CUGGGCu---CCGUa -5'
5325 3' -56.1 NC_001798.1 + 152205 0.7 0.689717
Target:  5'- cGGGGGgcgcggcccccgcGGGAGGGgcGGCCgCGGGGCGg -3'
miRNA:   3'- -CUCCC-------------UCUUCUCuuCUGG-GCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 52859 0.7 0.680498
Target:  5'- cGGGGGAGGgcugauguagcgGGGGAgcgGGACCgGGGGUAa -3'
miRNA:   3'- -CUCCCUCU------------UCUCU---UCUGGgCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 8337 0.7 0.670215
Target:  5'- aGAGGGGGGAcGGGgcGAgCCG-GGCAg -3'
miRNA:   3'- -CUCCCUCUU-CUCuuCUgGGCuCCGUa -5'
5325 3' -56.1 NC_001798.1 + 118046 0.7 0.649563
Target:  5'- cAGGG-GAGGGGAGGACgCGGGGgAg -3'
miRNA:   3'- cUCCCuCUUCUCUUCUGgGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 4020 0.71 0.628854
Target:  5'- cAGGGGGAAGAGAGGccACUCucGGCAc -3'
miRNA:   3'- cUCCCUCUUCUCUUC--UGGGcuCCGUa -5'
5325 3' -56.1 NC_001798.1 + 95407 0.72 0.58753
Target:  5'- gGAGGGGGAAGGGggGuggaaaggaCgGAGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCuuCug-------GgCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 139707 0.72 0.58753
Target:  5'- -cGGGAGcguGGGGcggauGGGCCCGGGGCGc -3'
miRNA:   3'- cuCCCUCu--UCUCu----UCUGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 80231 0.72 0.577263
Target:  5'- cGGGGcGAGAucGGggGGCUCGGGGCGc -3'
miRNA:   3'- -CUCC-CUCUucUCuuCUGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 4202 0.72 0.567037
Target:  5'- aGGaGGAGAcaaaGGAGAGcGGCCCGGGGCc- -3'
miRNA:   3'- cUC-CCUCU----UCUCUU-CUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 119982 0.72 0.566017
Target:  5'- gGAGGGAGAAGAaacggaacgcgGAAacgccgccggcgcGGCCCGGGGCc- -3'
miRNA:   3'- -CUCCCUCUUCU-----------CUU-------------CUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 8683 0.72 0.556857
Target:  5'- gGGGGGAacacGggGGGGAGGggUCCGGGGCGa -3'
miRNA:   3'- -CUCCCU----CuuCUCUUCU--GGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 87562 0.72 0.54673
Target:  5'- aGGGGGGAGGAGggGgcggggggacaGCCUGGGGUc- -3'
miRNA:   3'- cUCCCUCUUCUCuuC-----------UGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 80183 0.72 0.536663
Target:  5'- aGGGGGGAcGGAGAAGGCUCG-GGCc- -3'
miRNA:   3'- cUCCCUCU-UCUCUUCUGGGCuCCGua -5'
5325 3' -56.1 NC_001798.1 + 52795 0.73 0.497099
Target:  5'- uGGGGGGAccgccccggauAGAGGAGGCCCcgggGGGGCGa -3'
miRNA:   3'- cUCCCUCU-----------UCUCUUCUGGG----CUCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.