miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 5' -66.3 NC_001798.1 + 153733 0.66 0.422952
Target:  5'- -gACGCCCGauuccuucccccucUcCCCAucuccccccuCCCCCGCuCCCGg -3'
miRNA:   3'- aaUGCGGGC--------------AcGGGU----------GGGGGCG-GGGC- -5'
5325 5' -66.3 NC_001798.1 + 120210 0.66 0.417181
Target:  5'- -cACGCagGcGCCC-CCCCC-CCCCGg -3'
miRNA:   3'- aaUGCGggCaCGGGuGGGGGcGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 102826 0.66 0.417181
Target:  5'- gUUGCgGCCCGUGggggCCGCCgCCGUgCCGc -3'
miRNA:   3'- -AAUG-CGGGCACg---GGUGGgGGCGgGGC- -5'
5325 5' -66.3 NC_001798.1 + 84622 0.66 0.417181
Target:  5'- -gGCGCCCGccgGCaugaCC-CCCCCGUCCg- -3'
miRNA:   3'- aaUGCGGGCa--CG----GGuGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 79186 0.66 0.417181
Target:  5'- -gGCGgaCGUGgCCGCCCaCCGgCCCCu -3'
miRNA:   3'- aaUGCggGCACgGGUGGG-GGC-GGGGc -5'
5325 5' -66.3 NC_001798.1 + 49320 0.66 0.417181
Target:  5'- gUGCGCUgG-GCCUgcagcacuGCCgCCCGCUCCGc -3'
miRNA:   3'- aAUGCGGgCaCGGG--------UGG-GGGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 32297 0.66 0.417181
Target:  5'- gUGCGCCCccaccaGCUguCCCCCGCggCCCa -3'
miRNA:   3'- aAUGCGGGca----CGGguGGGGGCG--GGGc -5'
5325 5' -66.3 NC_001798.1 + 8806 0.66 0.417181
Target:  5'- -cGgGCCCcccCCCACCaCCCGCCCa- -3'
miRNA:   3'- aaUgCGGGcacGGGUGG-GGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 154218 0.66 0.417181
Target:  5'- -cGCGCCCGcgGCCCcgaGCUCgCagcaGCCCCu -3'
miRNA:   3'- aaUGCGGGCa-CGGG---UGGG-Gg---CGGGGc -5'
5325 5' -66.3 NC_001798.1 + 103802 0.66 0.417181
Target:  5'- gUACGCCgGagGCgCGCCUCCacccggucccauGCCCCGu -3'
miRNA:   3'- aAUGCGGgCa-CGgGUGGGGG------------CGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 126320 0.67 0.40902
Target:  5'- -gACGCCCcu-CCgACCCCCugacGCCCCu -3'
miRNA:   3'- aaUGCGGGcacGGgUGGGGG----CGGGGc -5'
5325 5' -66.3 NC_001798.1 + 126282 0.67 0.40902
Target:  5'- -gACGCCCcu-CCgACCCCCugacGCCCCu -3'
miRNA:   3'- aaUGCGGGcacGGgUGGGGG----CGGGGc -5'
5325 5' -66.3 NC_001798.1 + 126244 0.67 0.40902
Target:  5'- -gACGCCCcu-CCgACCCCCugacGCCCCu -3'
miRNA:   3'- aaUGCGGGcacGGgUGGGGG----CGGGGc -5'
5325 5' -66.3 NC_001798.1 + 25580 0.67 0.40902
Target:  5'- --uCGCCgCGaGCCCaucuucgccaACCCCCGCcaCCCGa -3'
miRNA:   3'- aauGCGG-GCaCGGG----------UGGGGGCG--GGGC- -5'
5325 5' -66.3 NC_001798.1 + 106902 0.67 0.40902
Target:  5'- -cGCGCUCc--UCCACCCCCcggggGCCCCGu -3'
miRNA:   3'- aaUGCGGGcacGGGUGGGGG-----CGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 94913 0.67 0.40902
Target:  5'- -gGCGCCgCGgucGCCCGCgUCCGgCUCGg -3'
miRNA:   3'- aaUGCGG-GCa--CGGGUGgGGGCgGGGC- -5'
5325 5' -66.3 NC_001798.1 + 84906 0.67 0.40902
Target:  5'- cUugGUCCGgGCcgccgucggCCGCCCCC-CCCCa -3'
miRNA:   3'- aAugCGGGCaCG---------GGUGGGGGcGGGGc -5'
5325 5' -66.3 NC_001798.1 + 67027 0.67 0.40902
Target:  5'- --cCGCCguaGcGCCgGCCCCCGCcggCCCGa -3'
miRNA:   3'- aauGCGGg--CaCGGgUGGGGGCG---GGGC- -5'
5325 5' -66.3 NC_001798.1 + 69744 0.67 0.40821
Target:  5'- gUGCGCCCc-GCUCgACCggccauggcgacgUCCGCCCCGg -3'
miRNA:   3'- aAUGCGGGcaCGGG-UGG-------------GGGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 124955 0.67 0.40096
Target:  5'- -aGCuCCCGgGCggACCCCgGCCCCGa -3'
miRNA:   3'- aaUGcGGGCaCGggUGGGGgCGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.