miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 5' -66.3 NC_001798.1 + 44731 0.66 0.450788
Target:  5'- -aACGCCC-UGauCCgCGCCUUCGUCCCGg -3'
miRNA:   3'- aaUGCGGGcAC--GG-GUGGGGGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 120324 0.66 0.450788
Target:  5'- --cCGCCCGccCCCcCCCCCucuCCCCGc -3'
miRNA:   3'- aauGCGGGCacGGGuGGGGGc--GGGGC- -5'
5325 5' -66.3 NC_001798.1 + 119287 0.66 0.450788
Target:  5'- -cGCgGCCCGUcuGCUgGCCCgCGgCCCGu -3'
miRNA:   3'- aaUG-CGGGCA--CGGgUGGGgGCgGGGC- -5'
5325 5' -66.3 NC_001798.1 + 7992 0.66 0.450788
Target:  5'- --cCGCCgGagaGCCCGagCCCCGCCCgCGu -3'
miRNA:   3'- aauGCGGgCa--CGGGUg-GGGGCGGG-GC- -5'
5325 5' -66.3 NC_001798.1 + 145143 0.66 0.448216
Target:  5'- -gACaGCCCGaggGCggccagcaacagggCCGCCCCCagcaccGCCCCGa -3'
miRNA:   3'- aaUG-CGGGCa--CG--------------GGUGGGGG------CGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 129313 0.66 0.442246
Target:  5'- -cGCGCgC-UGCgCCG-CCCCGCCCCc -3'
miRNA:   3'- aaUGCGgGcACG-GGUgGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 124201 0.66 0.442246
Target:  5'- -gACGUgugugCCGUGUgCACggacgagaucgCCCCGCCCCu -3'
miRNA:   3'- aaUGCG-----GGCACGgGUG-----------GGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 79724 0.66 0.442246
Target:  5'- ---aGUCCGcGCCCaagaagaagGCCCCCGUCgCCGc -3'
miRNA:   3'- aaugCGGGCaCGGG---------UGGGGGCGG-GGC- -5'
5325 5' -66.3 NC_001798.1 + 38126 0.66 0.442246
Target:  5'- -aGCGauCCCGUGaCCGaCCCCGCCCa- -3'
miRNA:   3'- aaUGC--GGGCACgGGUgGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 8144 0.66 0.442246
Target:  5'- -gGCGCCagcgGCCCACgccUCCCGCCgCa -3'
miRNA:   3'- aaUGCGGgca-CGGGUG---GGGGCGGgGc -5'
5325 5' -66.3 NC_001798.1 + 139197 0.66 0.442246
Target:  5'- --gUGCCCG-GCCCcgggcguuGCCgCCGCCgCGg -3'
miRNA:   3'- aauGCGGGCaCGGG--------UGGgGGCGGgGC- -5'
5325 5' -66.3 NC_001798.1 + 124558 0.66 0.442246
Target:  5'- -cACGgCgCGgggGuCCCGCCUCaCGCCCCGc -3'
miRNA:   3'- aaUGCgG-GCa--C-GGGUGGGG-GCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 8102 0.66 0.442246
Target:  5'- -gGCaUCCGgcgGCCgGCCCCaCGCCCUu -3'
miRNA:   3'- aaUGcGGGCa--CGGgUGGGG-GCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 37734 0.66 0.433796
Target:  5'- -gACGUCCcccugGUCC-CCCCgGCCCUGg -3'
miRNA:   3'- aaUGCGGGca---CGGGuGGGGgCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 149190 0.66 0.433796
Target:  5'- -cGCGCucCCGUugGCCC-CCgCCgGCCCCa -3'
miRNA:   3'- aaUGCG--GGCA--CGGGuGG-GGgCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 127028 0.66 0.433796
Target:  5'- -gGCGggagucCCCGU-CCUGCCgCCGCCCCu -3'
miRNA:   3'- aaUGC------GGGCAcGGGUGGgGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 6144 0.66 0.42544
Target:  5'- -cGCGCCgGUggugcgGCUgACCCCC-CCCCu -3'
miRNA:   3'- aaUGCGGgCA------CGGgUGGGGGcGGGGc -5'
5325 5' -66.3 NC_001798.1 + 36892 0.66 0.42544
Target:  5'- --uCGCCCGU-CCUcaGCCCCUGCUUCa -3'
miRNA:   3'- aauGCGGGCAcGGG--UGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 114828 0.66 0.42544
Target:  5'- -aACGCCgCGUcgaUgGCCUCCGCCCCu -3'
miRNA:   3'- aaUGCGG-GCAcg-GgUGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 154439 0.66 0.42544
Target:  5'- -gACGCCaGUcGCaCCACCgCUCGCCCUc -3'
miRNA:   3'- aaUGCGGgCA-CG-GGUGG-GGGCGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.