miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 5' -66.3 NC_001798.1 + 6220 0.71 0.22896
Target:  5'- aUGCGUugugauucaaCCGccCUCGCCCCCGCCCCa -3'
miRNA:   3'- aAUGCG----------GGCacGGGUGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 6522 0.68 0.347459
Target:  5'- -aACGCgCGaGCC--CCCUCGCCCCGa -3'
miRNA:   3'- aaUGCGgGCaCGGguGGGGGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 6811 0.69 0.273515
Target:  5'- gUACGCCCaccGCCCccacgcgccggucACCCCC-CCCCa -3'
miRNA:   3'- aAUGCGGGca-CGGG-------------UGGGGGcGGGGc -5'
5325 5' -66.3 NC_001798.1 + 7438 0.74 0.129776
Target:  5'- -cGCuCCCGgGCCCgACCCUCGCCCCu -3'
miRNA:   3'- aaUGcGGGCaCGGG-UGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 7546 0.72 0.188916
Target:  5'- --cCGCCCGgcgguccgGCCCggGCCCCCggcggagcgcggggGCCCCGg -3'
miRNA:   3'- aauGCGGGCa-------CGGG--UGGGGG--------------CGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 7699 0.67 0.385146
Target:  5'- gUGCGcCCCG-GCCggagggGCCCCCGCaCCuCGg -3'
miRNA:   3'- aAUGC-GGGCaCGGg-----UGGGGGCG-GG-GC- -5'
5325 5' -66.3 NC_001798.1 + 7992 0.66 0.450788
Target:  5'- --cCGCCgGagaGCCCGagCCCCGCCCgCGu -3'
miRNA:   3'- aauGCGGgCa--CGGGUg-GGGGCGGG-GC- -5'
5325 5' -66.3 NC_001798.1 + 8102 0.66 0.442246
Target:  5'- -gGCaUCCGgcgGCCgGCCCCaCGCCCUu -3'
miRNA:   3'- aaUGcGGGCa--CGGgUGGGG-GCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 8144 0.66 0.442246
Target:  5'- -gGCGCCagcgGCCCACgccUCCCGCCgCa -3'
miRNA:   3'- aaUGCGGgca-CGGGUG---GGGGCGGgGc -5'
5325 5' -66.3 NC_001798.1 + 8806 0.66 0.417181
Target:  5'- -cGgGCCCcccCCCACCaCCCGCCCa- -3'
miRNA:   3'- aaUgCGGGcacGGGUGG-GGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 9018 0.73 0.157407
Target:  5'- -gGC-CCCG-GCCCGCgCCCCGCCgCCa -3'
miRNA:   3'- aaUGcGGGCaCGGGUG-GGGGCGG-GGc -5'
5325 5' -66.3 NC_001798.1 + 9135 0.71 0.234242
Target:  5'- -cGCGacCCCGacCCCGCCCcaCCGCCCCGc -3'
miRNA:   3'- aaUGC--GGGCacGGGUGGG--GGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 9211 0.68 0.33314
Target:  5'- -cGCGCCCccGCCCgGCCgCCCGCgUCGc -3'
miRNA:   3'- aaUGCGGGcaCGGG-UGG-GGGCGgGGC- -5'
5325 5' -66.3 NC_001798.1 + 9253 0.75 0.114854
Target:  5'- -cGCGCCCccGCCCggccgccgcgcGCCCCCGCCCgGc -3'
miRNA:   3'- aaUGCGGGcaCGGG-----------UGGGGGCGGGgC- -5'
5325 5' -66.3 NC_001798.1 + 9295 0.75 0.114854
Target:  5'- -cGCGCCCccGCCCggccgccgcgcGCCCCCGCCCgGc -3'
miRNA:   3'- aaUGCGGGcaCGGG-----------UGGGGGCGGGgC- -5'
5325 5' -66.3 NC_001798.1 + 9337 0.75 0.114854
Target:  5'- -cGCGCCCccGCCCggccgccgcgcGCCCCCGCCCgGc -3'
miRNA:   3'- aaUGCGGGcaCGGG-----------UGGGGGCGGGgC- -5'
5325 5' -66.3 NC_001798.1 + 9641 0.8 0.050264
Target:  5'- --uUGCCUGUGaCCCACCCCaCGCCCCc -3'
miRNA:   3'- aauGCGGGCAC-GGGUGGGG-GCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 12220 0.7 0.239083
Target:  5'- -gACGUCC--GCCCGaccacacCCCCCGCCCCc -3'
miRNA:   3'- aaUGCGGGcaCGGGU-------GGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 15358 0.69 0.292812
Target:  5'- -gACGUCCGggcaccagGUCCGCCCCCacagcaGCCCgGg -3'
miRNA:   3'- aaUGCGGGCa-------CGGGUGGGGG------CGGGgC- -5'
5325 5' -66.3 NC_001798.1 + 16802 0.69 0.292812
Target:  5'- --cCGCCCG-GUCCGCCgcgcgcugcuCCCGCUCCa -3'
miRNA:   3'- aauGCGGGCaCGGGUGG----------GGGCGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.