miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 5' -66.3 NC_001798.1 + 200 0.69 0.286473
Target:  5'- -cGCGgcuuuuuuCCCGcGCCCGCCCCCGCgCgGc -3'
miRNA:   3'- aaUGC--------GGGCaCGGGUGGGGGCGgGgC- -5'
5325 5' -66.3 NC_001798.1 + 506 0.68 0.319259
Target:  5'- ---aGUCCGUGCUUGCCuagcgaacucaCCCGUCCCGg -3'
miRNA:   3'- aaugCGGGCACGGGUGG-----------GGGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 898 0.67 0.393001
Target:  5'- -gGCGCCUucccCCCGCCCUCGCUCgGg -3'
miRNA:   3'- aaUGCGGGcac-GGGUGGGGGCGGGgC- -5'
5325 5' -66.3 NC_001798.1 + 2631 0.69 0.305816
Target:  5'- -aGCGUCCccGCCCccgaGCCCaCCGCCCgCGa -3'
miRNA:   3'- aaUGCGGGcaCGGG----UGGG-GGCGGG-GC- -5'
5325 5' -66.3 NC_001798.1 + 2882 0.68 0.332436
Target:  5'- -cGCGCcgugucccCCGUGUCCcucccucACCCCgGCCCCc -3'
miRNA:   3'- aaUGCG--------GGCACGGG-------UGGGGgCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 3484 0.74 0.136232
Target:  5'- -cACGgCCGUGCCgGCCCgcacggCCGCCUCGg -3'
miRNA:   3'- aaUGCgGGCACGGgUGGG------GGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 3650 0.75 0.123603
Target:  5'- --cCGCCCGccccccGCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGCa-----CGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 3683 0.75 0.123603
Target:  5'- --cCGCCCGacccccGCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGCa-----CGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 3716 0.75 0.123603
Target:  5'- --cCGCCCGacccccGCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGCa-----CGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 3749 0.75 0.123603
Target:  5'- --cCGCCCGacccccGCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGCa-----CGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 3858 0.7 0.268107
Target:  5'- --uCGCCCccGCaccgCCGCCCCCGCgCCGg -3'
miRNA:   3'- aauGCGGGcaCG----GGUGGGGGCGgGGC- -5'
5325 5' -66.3 NC_001798.1 + 3973 0.69 0.30847
Target:  5'- --cCGCCCccagacccagauCCCACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGcac---------GGGUGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 4048 0.69 0.286473
Target:  5'- -cGCGCCUGcGCgCGCCCCCcGCCggCCGc -3'
miRNA:   3'- aaUGCGGGCaCGgGUGGGGG-CGG--GGC- -5'
5325 5' -66.3 NC_001798.1 + 4089 0.68 0.33314
Target:  5'- -gGCGUCC-UGCCCuCCgCCGCCgCGg -3'
miRNA:   3'- aaUGCGGGcACGGGuGGgGGCGGgGC- -5'
5325 5' -66.3 NC_001798.1 + 4495 0.67 0.369751
Target:  5'- -cGCGCCCG-GCCC--UCCCGaCCCGc -3'
miRNA:   3'- aaUGCGGGCaCGGGugGGGGCgGGGC- -5'
5325 5' -66.3 NC_001798.1 + 4701 0.67 0.369751
Target:  5'- -gGgGCCCGgcgcgGCgCCGCCCUCuugGCCCCc -3'
miRNA:   3'- aaUgCGGGCa----CG-GGUGGGGG---CGGGGc -5'
5325 5' -66.3 NC_001798.1 + 5674 0.67 0.377396
Target:  5'- -cGgGgCCGUGUCCGuCCCCCcCCCCc -3'
miRNA:   3'- aaUgCgGGCACGGGU-GGGGGcGGGGc -5'
5325 5' -66.3 NC_001798.1 + 5891 0.72 0.199352
Target:  5'- -gGCGgcuuCUCGUGCCCGCCCCCcCUCCu -3'
miRNA:   3'- aaUGC----GGGCACGGGUGGGGGcGGGGc -5'
5325 5' -66.3 NC_001798.1 + 6097 0.7 0.256399
Target:  5'- -gGCGCCCu--CCCACUCCUGCCCa- -3'
miRNA:   3'- aaUGCGGGcacGGGUGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 6144 0.66 0.42544
Target:  5'- -cGCGCCgGUggugcgGCUgACCCCC-CCCCu -3'
miRNA:   3'- aaUGCGGgCA------CGGgUGGGGGcGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.