miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 5' -66.3 NC_001798.1 + 154538 0.69 0.286473
Target:  5'- -cGCGgcuuuuuuCCCGcGCCCGCCCCCGCgCgGc -3'
miRNA:   3'- aaUGC--------GGGCaCGGGUGGGGGCGgGgC- -5'
5325 5' -66.3 NC_001798.1 + 154439 0.66 0.42544
Target:  5'- -gACGCCaGUcGCaCCACCgCUCGCCCUc -3'
miRNA:   3'- aaUGCGGgCA-CG-GGUGG-GGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 154255 0.75 0.12062
Target:  5'- -cGCGCCCc-GCCCcgggggcuuCCCCCGCCCCu -3'
miRNA:   3'- aaUGCGGGcaCGGGu--------GGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 154218 0.66 0.417181
Target:  5'- -cGCGCCCGcgGCCCcgaGCUCgCagcaGCCCCu -3'
miRNA:   3'- aaUGCGGGCa-CGGG---UGGG-Gg---CGGGGc -5'
5325 5' -66.3 NC_001798.1 + 154179 0.74 0.126655
Target:  5'- -cGCGcCCCGUGCCUuccCUCCCGCUCCu -3'
miRNA:   3'- aaUGC-GGGCACGGGu--GGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 154070 0.72 0.17728
Target:  5'- --cCGCCC--GCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGcaCGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 154040 0.72 0.17728
Target:  5'- --cCGCCC--GCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGcaCGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 154010 0.72 0.17728
Target:  5'- --cCGCCC--GCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGcaCGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 153980 0.72 0.17728
Target:  5'- --cCGCCC--GCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGcaCGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 153950 0.72 0.17728
Target:  5'- --cCGCCC--GCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGcaCGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 153920 0.72 0.17728
Target:  5'- --cCGCCC--GCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGcaCGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 153890 0.72 0.17728
Target:  5'- --cCGCCC--GCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGcaCGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 153860 0.72 0.17728
Target:  5'- --cCGCCC--GCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGcaCGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 153733 0.66 0.422952
Target:  5'- -gACGCCCGauuccuucccccucUcCCCAucuccccccuCCCCCGCuCCCGg -3'
miRNA:   3'- aaUGCGGGC--------------AcGGGU----------GGGGGCG-GGGC- -5'
5325 5' -66.3 NC_001798.1 + 153429 0.7 0.2622
Target:  5'- -aGCGCCCGcGCgCagaACUCCCGCCgCGg -3'
miRNA:   3'- aaUGCGGGCaCG-Gg--UGGGGGCGGgGC- -5'
5325 5' -66.3 NC_001798.1 + 153083 0.67 0.380483
Target:  5'- -gGCGCgCGUGCgcggCCuccacgcgcgcgaagACCCCCGgCCCGa -3'
miRNA:   3'- aaUGCGgGCACG----GG---------------UGGGGGCgGGGC- -5'
5325 5' -66.3 NC_001798.1 + 152670 0.67 0.400159
Target:  5'- -cGCGCucggcggaccacuCCGggggggGCCCGCCCCCGgCgCGg -3'
miRNA:   3'- aaUGCG-------------GGCa-----CGGGUGGGGGCgGgGC- -5'
5325 5' -66.3 NC_001798.1 + 151626 0.68 0.319259
Target:  5'- -cACgGCCaCGcgGCCCGCCUCCGCgCgCCGg -3'
miRNA:   3'- aaUG-CGG-GCa-CGGGUGGGGGCG-G-GGC- -5'
5325 5' -66.3 NC_001798.1 + 150954 0.71 0.210774
Target:  5'- -gGCGCCCGaggccucgaaccggGCCCGcgccuCCUCCGCCUCGg -3'
miRNA:   3'- aaUGCGGGCa-------------CGGGU-----GGGGGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 150892 0.68 0.325451
Target:  5'- -gGCGgCUGUcGCCCAgCCCgccguacagcacgCGCCCCGg -3'
miRNA:   3'- aaUGCgGGCA-CGGGUgGGG-------------GCGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.