miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 5' -66.3 NC_001798.1 + 121136 1.06 0.000595
Target:  5'- cUUACGCCCGUGCCCACCCCCGCCCCGg -3'
miRNA:   3'- -AAUGCGGGCACGGGUGGGGGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 9641 0.8 0.050264
Target:  5'- --uUGCCUGUGaCCCACCCCaCGCCCCc -3'
miRNA:   3'- aauGCGGGCAC-GGGUGGGG-GCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 19165 0.8 0.051558
Target:  5'- aUACGCCCGcGCCuCGCCCCCuCCCUGg -3'
miRNA:   3'- aAUGCGGGCaCGG-GUGGGGGcGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 72357 0.79 0.055638
Target:  5'- -cGCGCUCgGUGCCCcagccGCCCCUGCCCCa -3'
miRNA:   3'- aaUGCGGG-CACGGG-----UGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 102775 0.79 0.057066
Target:  5'- -cGCGCCCc--CCCACCCCgGCCCCGa -3'
miRNA:   3'- aaUGCGGGcacGGGUGGGGgCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 78731 0.79 0.057066
Target:  5'- -gGC-CCCGUGCCCGCCCgCCcuggGCCCCGa -3'
miRNA:   3'- aaUGcGGGCACGGGUGGG-GG----CGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 78767 0.79 0.063141
Target:  5'- -gAUGCCCGUGCCCGCCgCCCcggGCgCCGg -3'
miRNA:   3'- aaUGCGGGCACGGGUGG-GGG---CGgGGC- -5'
5325 5' -66.3 NC_001798.1 + 130056 0.77 0.079177
Target:  5'- ---aGCCCGgcccGCCgCGCCCCCGCgCCCGg -3'
miRNA:   3'- aaugCGGGCa---CGG-GUGGGGGCG-GGGC- -5'
5325 5' -66.3 NC_001798.1 + 72265 0.77 0.081183
Target:  5'- --cCGCCCcUGCCCcagccGCCCCUGCCCCa -3'
miRNA:   3'- aauGCGGGcACGGG-----UGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 72235 0.77 0.081183
Target:  5'- --cCGCCCcUGCCCcagccGCCCCUGCCCCa -3'
miRNA:   3'- aauGCGGGcACGGG-----UGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 72325 0.77 0.081183
Target:  5'- --cCGCCCcUGCCCcagccGCCCCUGCCCCa -3'
miRNA:   3'- aauGCGGGcACGGG-----UGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 72295 0.77 0.081183
Target:  5'- --cCGCCCcUGCCCcagccGCCCCUGCCCCa -3'
miRNA:   3'- aauGCGGGcACGGG-----UGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 123632 0.77 0.085341
Target:  5'- cUACGUCCc-GCCCGCCCCCcgaagagcGCCCCGg -3'
miRNA:   3'- aAUGCGGGcaCGGGUGGGGG--------CGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 120993 0.77 0.087495
Target:  5'- --cCGCCCGcacaccUGCCCGCCacgCCCGCCCCu -3'
miRNA:   3'- aauGCGGGC------ACGGGUGG---GGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 121100 0.77 0.087495
Target:  5'- --cCGCCCGcacaccUGCCCGCCacgCCCGCCCCu -3'
miRNA:   3'- aauGCGGGC------ACGGGUGG---GGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 130376 0.76 0.09196
Target:  5'- -gACGCCCGcgggaaGCCCGCCgCCGCCgCCGc -3'
miRNA:   3'- aaUGCGGGCa-----CGGGUGGgGGCGG-GGC- -5'
5325 5' -66.3 NC_001798.1 + 123880 0.76 0.094273
Target:  5'- -cGCGCCCuGUcGCCCACCCCCccguGgCCCGg -3'
miRNA:   3'- aaUGCGGG-CA-CGGGUGGGGG----CgGGGC- -5'
5325 5' -66.3 NC_001798.1 + 131162 0.76 0.096641
Target:  5'- -gGCGcCCCGgccgaGCCCGCCcagggccgagCCCGCCCCGg -3'
miRNA:   3'- aaUGC-GGGCa----CGGGUGG----------GGGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 72671 0.76 0.104086
Target:  5'- -cGCGgCCG-GCCCACCCCggcgccucacgCGCCCCGc -3'
miRNA:   3'- aaUGCgGGCaCGGGUGGGG-----------GCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 99942 0.76 0.106949
Target:  5'- -cAUGCCCGcgggcgucgggcuugGCgCCACCCCCGCCgCCGa -3'
miRNA:   3'- aaUGCGGGCa--------------CG-GGUGGGGGCGG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.