miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 5' -66.3 NC_001798.1 + 43016 0.75 0.112068
Target:  5'- ---gGCCCGcuugGCCCccgcGCCCCCGgCCCCGg -3'
miRNA:   3'- aaugCGGGCa---CGGG----UGGGGGC-GGGGC- -5'
5325 5' -66.3 NC_001798.1 + 58641 0.75 0.112068
Target:  5'- -cGCGCCUcUGaCCCACCCCC-CCCCa -3'
miRNA:   3'- aaUGCGGGcAC-GGGUGGGGGcGGGGc -5'
5325 5' -66.3 NC_001798.1 + 9295 0.75 0.114854
Target:  5'- -cGCGCCCccGCCCggccgccgcgcGCCCCCGCCCgGc -3'
miRNA:   3'- aaUGCGGGcaCGGG-----------UGGGGGCGGGgC- -5'
5325 5' -66.3 NC_001798.1 + 9253 0.75 0.114854
Target:  5'- -cGCGCCCccGCCCggccgccgcgcGCCCCCGCCCgGc -3'
miRNA:   3'- aaUGCGGGcaCGGG-----------UGGGGGCGGGgC- -5'
5325 5' -66.3 NC_001798.1 + 9337 0.75 0.114854
Target:  5'- -cGCGCCCccGCCCggccgccgcgcGCCCCCGCCCgGc -3'
miRNA:   3'- aaUGCGGGcaCGGG-----------UGGGGGCGGGgC- -5'
5325 5' -66.3 NC_001798.1 + 130938 0.75 0.114854
Target:  5'- ---gGCCCGggGCCgGCcCCCCGCCCCc -3'
miRNA:   3'- aaugCGGGCa-CGGgUG-GGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 130258 0.75 0.117704
Target:  5'- -gGCGCCUGagcgccgcGCCCGCCUCCGCgCCGg -3'
miRNA:   3'- aaUGCGGGCa-------CGGGUGGGGGCGgGGC- -5'
5325 5' -66.3 NC_001798.1 + 116716 0.75 0.117704
Target:  5'- aUGgGCCCGUGCaCCGCagCCGCCCCc -3'
miRNA:   3'- aAUgCGGGCACG-GGUGggGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 154255 0.75 0.12062
Target:  5'- -cGCGCCCc-GCCCcgggggcuuCCCCCGCCCCu -3'
miRNA:   3'- aaUGCGGGcaCGGGu--------GGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 39433 0.75 0.12062
Target:  5'- -cACGCCggggaccugGUGCCCGCCCCCGgccaCCCGg -3'
miRNA:   3'- aaUGCGGg--------CACGGGUGGGGGCg---GGGC- -5'
5325 5' -66.3 NC_001798.1 + 3749 0.75 0.123603
Target:  5'- --cCGCCCGacccccGCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGCa-----CGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 32241 0.75 0.123603
Target:  5'- -cGCGCUCGagggaccccUGCgCCACCCgCGCCCCGu -3'
miRNA:   3'- aaUGCGGGC---------ACG-GGUGGGgGCGGGGC- -5'
5325 5' -66.3 NC_001798.1 + 3716 0.75 0.123603
Target:  5'- --cCGCCCGacccccGCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGCa-----CGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 3650 0.75 0.123603
Target:  5'- --cCGCCCGccccccGCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGCa-----CGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 3683 0.75 0.123603
Target:  5'- --cCGCCCGacccccGCCCgACCCCCGCCCg- -3'
miRNA:   3'- aauGCGGGCa-----CGGG-UGGGGGCGGGgc -5'
5325 5' -66.3 NC_001798.1 + 154179 0.74 0.126655
Target:  5'- -cGCGcCCCGUGCCUuccCUCCCGCUCCu -3'
miRNA:   3'- aaUGC-GGGCACGGGu--GGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 119003 0.74 0.126655
Target:  5'- --cCGCCCGgccGCCCACuCCCCGCUCgGc -3'
miRNA:   3'- aauGCGGGCa--CGGGUG-GGGGCGGGgC- -5'
5325 5' -66.3 NC_001798.1 + 72436 0.74 0.129776
Target:  5'- --gUGCCCGgagGCCCgguuGCCCgCCGCCCCc -3'
miRNA:   3'- aauGCGGGCa--CGGG----UGGG-GGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 7438 0.74 0.129776
Target:  5'- -cGCuCCCGgGCCCgACCCUCGCCCCu -3'
miRNA:   3'- aaUGcGGGCaCGGG-UGGGGGCGGGGc -5'
5325 5' -66.3 NC_001798.1 + 120813 0.74 0.135245
Target:  5'- -cGCGCgCGUGCCUaccuuucccuagcgGCCCCgGCCCCc -3'
miRNA:   3'- aaUGCGgGCACGGG--------------UGGGGgCGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.