miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 33716 1.08 0.002002
Target:  5'- aGAGGAGACCCGAGGCAUGCAACCGCAc -3'
miRNA:   3'- -CUCCUCUGGGCUCCGUACGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 33584 0.89 0.041134
Target:  5'- aGAGaAGACCCGAGGCAUGCAcCCGCAc -3'
miRNA:   3'- -CUCcUCUGGGCUCCGUACGUuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 79535 0.78 0.203074
Target:  5'- -cGGAGACCCGGGGCcccUGguGCUGCGu -3'
miRNA:   3'- cuCCUCUGGGCUCCGu--ACguUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 101971 0.77 0.235068
Target:  5'- aGAGGAGGCCCcgggGGGGCGaugUGCGGCgGCGg -3'
miRNA:   3'- -CUCCUCUGGG----CUCCGU---ACGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 39472 0.75 0.318812
Target:  5'- aGGGGGGGCCUGGcGCGUGCcucguGGCCGCGg -3'
miRNA:   3'- -CUCCUCUGGGCUcCGUACG-----UUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 27207 0.75 0.338035
Target:  5'- cGGGGGAagccCCCGGGGCGgggcgcgggggagGCGGCCGCGg -3'
miRNA:   3'- cUCCUCU----GGGCUCCGUa------------CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 137485 0.75 0.341066
Target:  5'- gGAGGGGGgCCGGGGCAg--AGCCGCGu -3'
miRNA:   3'- -CUCCUCUgGGCUCCGUacgUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 149928 0.74 0.348729
Target:  5'- gGAGGAGGag-GAGGCGgcgGCGACCGCGg -3'
miRNA:   3'- -CUCCUCUgggCUCCGUa--CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 123945 0.74 0.364422
Target:  5'- -cGGGGGCCUGGuGGCAccuccccgGCGGCCGCAu -3'
miRNA:   3'- cuCCUCUGGGCU-CCGUa-------CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 135793 0.74 0.370028
Target:  5'- gGAGGAGgccgugugcgcgGCCCGGGGCGucauggaggacgccUGUGACCGCu -3'
miRNA:   3'- -CUCCUC------------UGGGCUCCGU--------------ACGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 79307 0.74 0.378139
Target:  5'- gGAGGAGuuCCGGGGCGcGCGggaacucauccaauACCGCAu -3'
miRNA:   3'- -CUCCUCugGGCUCCGUaCGU--------------UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 48369 0.73 0.405739
Target:  5'- -cGGGGccGCCCcgcGGGGCGUGCcGCCGCGa -3'
miRNA:   3'- cuCCUC--UGGG---CUCCGUACGuUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 23798 0.73 0.423072
Target:  5'- cGGGGAGccgugGCCCGGGGCcgGCcccCCGCc -3'
miRNA:   3'- -CUCCUC-----UGGGCUCCGuaCGuu-GGCGu -5'
5326 3' -58.1 NC_001798.1 + 14318 0.73 0.431903
Target:  5'- uGGGGGGugCgugggGAGGCGUGCggUCGCGu -3'
miRNA:   3'- -CUCCUCugGg----CUCCGUACGuuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 35574 0.72 0.477602
Target:  5'- -cGGAG-CCCGcGGCGcugcucggcUGCGGCCGCGg -3'
miRNA:   3'- cuCCUCuGGGCuCCGU---------ACGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 154393 0.71 0.506139
Target:  5'- gGGGGGGGCgCGaAGGCggGCGGCgGCGg -3'
miRNA:   3'- -CUCCUCUGgGC-UCCGuaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 55 0.71 0.506139
Target:  5'- gGGGGGGGCgCGaAGGCggGCGGCgGCGg -3'
miRNA:   3'- -CUCCUCUGgGC-UCCGuaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 49772 0.71 0.525564
Target:  5'- cGGGGAGuuCCCgugGAGGCccgGCGACUGCGg -3'
miRNA:   3'- -CUCCUCu-GGG---CUCCGua-CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 2562 0.71 0.525564
Target:  5'- gGAGGGGcgGCCgCGGGGCGggggGCGuCCGCGc -3'
miRNA:   3'- -CUCCUC--UGG-GCUCCGUa---CGUuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 79249 0.71 0.543282
Target:  5'- uGGGGGGCCUGcuGGCGgaguucgacgcgGCGGCCGCGg -3'
miRNA:   3'- cUCCUCUGGGCu-CCGUa-----------CGUUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.