miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 55 0.71 0.506139
Target:  5'- gGGGGGGGCgCGaAGGCggGCGGCgGCGg -3'
miRNA:   3'- -CUCCUCUGgGC-UCCGuaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 2097 0.67 0.726502
Target:  5'- gGGGGGGGCCCGcccccGGC--GCGGcCCGCGg -3'
miRNA:   3'- -CUCCUCUGGGCu----CCGuaCGUU-GGCGU- -5'
5326 3' -58.1 NC_001798.1 + 2219 0.68 0.696759
Target:  5'- cAGcGGGCCCGAGGCGcGCAGCgGg- -3'
miRNA:   3'- cUCcUCUGGGCUCCGUaCGUUGgCgu -5'
5326 3' -58.1 NC_001798.1 + 2493 0.68 0.686726
Target:  5'- cGGGucAGcGCCgCGGGGCGcgGCGGCCGCGg -3'
miRNA:   3'- cUCC--UC-UGG-GCUCCGUa-CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 2562 0.71 0.525564
Target:  5'- gGAGGGGcgGCCgCGGGGCGggggGCGuCCGCGc -3'
miRNA:   3'- -CUCCUC--UGG-GCUCCGUa---CGUuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 4899 0.67 0.736267
Target:  5'- -cGGAGAUCCGGGGCcgccgGuCGucuccGCCGCGg -3'
miRNA:   3'- cuCCUCUGGGCUCCGua---C-GU-----UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 6004 0.69 0.646233
Target:  5'- -cGGAGACCgGGacGGCA-GCGGCgGCAu -3'
miRNA:   3'- cuCCUCUGGgCU--CCGUaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 9119 0.69 0.625887
Target:  5'- gGGGGAGccGCCgCGAGGUGgucUGCGGCaCGCGg -3'
miRNA:   3'- -CUCCUC--UGG-GCUCCGU---ACGUUG-GCGU- -5'
5326 3' -58.1 NC_001798.1 + 10615 0.67 0.745943
Target:  5'- cGAGcGGuuCCGGGGCGcgcaUGCAcGCCGCAu -3'
miRNA:   3'- -CUCcUCugGGCUCCGU----ACGU-UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 12904 0.66 0.81905
Target:  5'- -cGGGGGCuuGGGGCcGUGCcACCcgGCGa -3'
miRNA:   3'- cuCCUCUGggCUCCG-UACGuUGG--CGU- -5'
5326 3' -58.1 NC_001798.1 + 13408 0.7 0.575232
Target:  5'- uGGGGGGCCUccgauGGGGCAUGUAGgaGCAc -3'
miRNA:   3'- cUCCUCUGGG-----CUCCGUACGUUggCGU- -5'
5326 3' -58.1 NC_001798.1 + 14318 0.73 0.431903
Target:  5'- uGGGGGGugCgugggGAGGCGUGCggUCGCGu -3'
miRNA:   3'- -CUCCUCugGg----CUCCGUACGuuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 14952 0.7 0.605559
Target:  5'- uGGGGugugGGGCCCGAGGCAUGUccuuaGCGg -3'
miRNA:   3'- -CUCC----UCUGGGCUCCGUACGuugg-CGU- -5'
5326 3' -58.1 NC_001798.1 + 16184 0.67 0.726502
Target:  5'- -cGGGGACCgGGGGgAcGCAcggGCCGCc -3'
miRNA:   3'- cuCCUCUGGgCUCCgUaCGU---UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 18255 0.68 0.716656
Target:  5'- -cGGGGGCCCGggggccAGGUAcGCAuccuCCGCGg -3'
miRNA:   3'- cuCCUCUGGGC------UCCGUaCGUu---GGCGU- -5'
5326 3' -58.1 NC_001798.1 + 23798 0.73 0.423072
Target:  5'- cGGGGAGccgugGCCCGGGGCcgGCcccCCGCc -3'
miRNA:   3'- -CUCCUC-----UGGGCUCCGuaCGuu-GGCGu -5'
5326 3' -58.1 NC_001798.1 + 23880 0.69 0.625887
Target:  5'- uGGGGGGcGCCCGAGGCGgaGgAGgCGCGg -3'
miRNA:   3'- -CUCCUC-UGGGCUCCGUa-CgUUgGCGU- -5'
5326 3' -58.1 NC_001798.1 + 24717 0.67 0.76499
Target:  5'- --cGGGGCCCGcGGGC--GCGGCCGCc -3'
miRNA:   3'- cucCUCUGGGC-UCCGuaCGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 24826 0.66 0.78357
Target:  5'- -cGGGGACCUGcgcguGGCcgGCGGCaGCGa -3'
miRNA:   3'- cuCCUCUGGGCu----CCGuaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 25242 0.67 0.75552
Target:  5'- cGAGGGccccGACCCGcaGGGCGgcugGC-GCCGCc -3'
miRNA:   3'- -CUCCU----CUGGGC--UCCGUa---CGuUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.