miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 25808 0.67 0.749786
Target:  5'- -uGGAGuuCCUGGGGCugcuggccggcgccUGCGACCGCc -3'
miRNA:   3'- cuCCUCu-GGGCUCCGu-------------ACGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 27207 0.75 0.338035
Target:  5'- cGGGGGAagccCCCGGGGCGgggcgcgggggagGCGGCCGCGg -3'
miRNA:   3'- cUCCUCU----GGGCUCCGUa------------CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 27607 0.67 0.774343
Target:  5'- aAGGGGGCgCgCGGGGC-UGCccuGCCGCc -3'
miRNA:   3'- cUCCUCUG-G-GCUCCGuACGu--UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 28199 0.67 0.75552
Target:  5'- cGGGGGGaaggcGCCgGAGGCcccGCAcGCCGCGc -3'
miRNA:   3'- -CUCCUC-----UGGgCUCCGua-CGU-UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 28776 0.66 0.801613
Target:  5'- gGAGGAGGag-GAGGCGgcgGCGGCgGCGc -3'
miRNA:   3'- -CUCCUCUgggCUCCGUa--CGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 29980 0.69 0.625887
Target:  5'- cGGGGGACCCccguGGGcCGUGC-GCCGCc -3'
miRNA:   3'- cUCCUCUGGGc---UCC-GUACGuUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 31811 0.66 0.78995
Target:  5'- gGAGGgaGGACCCGGGGUcccccgcgGCAccaacacccccgguGCCGCc -3'
miRNA:   3'- -CUCC--UCUGGGCUCCGua------CGU--------------UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 32361 0.69 0.656393
Target:  5'- -cGGAGggcggccccgaGCCCGGGGCccGCGACCcgGCGc -3'
miRNA:   3'- cuCCUC-----------UGGGCUCCGuaCGUUGG--CGU- -5'
5326 3' -58.1 NC_001798.1 + 33336 0.68 0.676648
Target:  5'- aGGGGGGCCCGAu-CGUGCAGagcaCGCAc -3'
miRNA:   3'- cUCCUCUGGGCUccGUACGUUg---GCGU- -5'
5326 3' -58.1 NC_001798.1 + 33584 0.89 0.041134
Target:  5'- aGAGaAGACCCGAGGCAUGCAcCCGCAc -3'
miRNA:   3'- -CUCcUCUGGGCUCCGUACGUuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 33716 1.08 0.002002
Target:  5'- aGAGGAGACCCGAGGCAUGCAACCGCAc -3'
miRNA:   3'- -CUCCUCUGGGCUCCGUACGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 34734 0.67 0.726502
Target:  5'- cGAGGgucGGGCCCGGGaGCGggGCGGCC-CGg -3'
miRNA:   3'- -CUCC---UCUGGGCUC-CGUa-CGUUGGcGU- -5'
5326 3' -58.1 NC_001798.1 + 34835 0.66 0.792663
Target:  5'- -cGGGGGCCCG-GGCcgG--ACCGCc -3'
miRNA:   3'- cuCCUCUGGGCuCCGuaCguUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 35421 0.68 0.676648
Target:  5'- -cGGGGGCCUaaugcggcggGAGGCGUG-GGCCGCu -3'
miRNA:   3'- cuCCUCUGGG----------CUCCGUACgUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 35574 0.72 0.477602
Target:  5'- -cGGAG-CCCGcGGCGcugcucggcUGCGGCCGCGg -3'
miRNA:   3'- cuCCUCuGGGCuCCGU---------ACGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 36110 0.69 0.636061
Target:  5'- gGGGGGGGCCC--GGC-UGCGucucGCCGCGa -3'
miRNA:   3'- -CUCCUCUGGGcuCCGuACGU----UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 39472 0.75 0.318812
Target:  5'- aGGGGGGGCCUGGcGCGUGCcucguGGCCGCGg -3'
miRNA:   3'- -CUCCUCUGGGCUcCGUACG-----UUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 39770 0.67 0.768746
Target:  5'- cGGGGGGAagccgaccgccugguCCCGAGGC--GCGACCaCAc -3'
miRNA:   3'- -CUCCUCU---------------GGGCUCCGuaCGUUGGcGU- -5'
5326 3' -58.1 NC_001798.1 + 41658 0.66 0.78357
Target:  5'- gGAGGgagcGGACCgCGAgcauGGCGUGC--CCGCAu -3'
miRNA:   3'- -CUCC----UCUGG-GCU----CCGUACGuuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 43024 0.66 0.82752
Target:  5'- cGGGGGGAgcgcggggcCCCGGGcGCAaaUGCGGCgCGUg -3'
miRNA:   3'- -CUCCUCU---------GGGCUC-CGU--ACGUUG-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.