miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 154393 0.71 0.506139
Target:  5'- gGGGGGGGCgCGaAGGCggGCGGCgGCGg -3'
miRNA:   3'- -CUCCUCUGgGC-UCCGuaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 151615 0.7 0.555202
Target:  5'- gGGGGccGGGCCgGGGGCGUG--GCCGCGu -3'
miRNA:   3'- -CUCC--UCUGGgCUCCGUACguUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 150546 0.69 0.635044
Target:  5'- gGAGGAGacaaaggagagcgGCCCGGGGCccGCGggGCgGCGc -3'
miRNA:   3'- -CUCCUC-------------UGGGCUCCGuaCGU--UGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 150199 0.66 0.792663
Target:  5'- uGGGGGGcggcACCgGGGGUGUuGguGCCGCGg -3'
miRNA:   3'- -CUCCUC----UGGgCUCCGUA-CguUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 149967 0.68 0.716656
Target:  5'- -cGGAGACgCCGAcgggGGCGcgGCGcCCGCGg -3'
miRNA:   3'- cuCCUCUG-GGCU----CCGUa-CGUuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 149928 0.74 0.348729
Target:  5'- gGAGGAGGag-GAGGCGgcgGCGACCGCGg -3'
miRNA:   3'- -CUCCUCUgggCUCCGUa--CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 147702 0.67 0.745943
Target:  5'- aGGGGGGGuCCCagaaaGGGCAggcagGuCAGCCGCAc -3'
miRNA:   3'- -CUCCUCU-GGGc----UCCGUa----C-GUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 147237 0.68 0.706739
Target:  5'- cGGGGGcCCCGGGGCcccgGGCCGCGc -3'
miRNA:   3'- cUCCUCuGGGCUCCGuacgUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 146441 0.68 0.706739
Target:  5'- -cGGAGccCCCGGaGCccGCGGCCGCAg -3'
miRNA:   3'- cuCCUCu-GGGCUcCGuaCGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 146263 0.66 0.81905
Target:  5'- aAGGAGACCCaa-GCAccGCAGCCGgAg -3'
miRNA:   3'- cUCCUCUGGGcucCGUa-CGUUGGCgU- -5'
5326 3' -58.1 NC_001798.1 + 137485 0.75 0.341066
Target:  5'- gGAGGGGGgCCGGGGCAg--AGCCGCGu -3'
miRNA:   3'- -CUCCUCUgGGCUCCGUacgUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 136605 0.69 0.615717
Target:  5'- gGGGGAcgGGCCCG-GGCAacUGCAA-CGCAg -3'
miRNA:   3'- -CUCCU--CUGGGCuCCGU--ACGUUgGCGU- -5'
5326 3' -58.1 NC_001798.1 + 135793 0.74 0.370028
Target:  5'- gGAGGAGgccgugugcgcgGCCCGGGGCGucauggaggacgccUGUGACCGCu -3'
miRNA:   3'- -CUCCUC------------UGGGCUCCGU--------------ACGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 134222 0.69 0.615717
Target:  5'- uGGGGGACCCGAcccuguggcgGGCGcUGUAugCGUg -3'
miRNA:   3'- cUCCUCUGGGCU----------CCGU-ACGUugGCGu -5'
5326 3' -58.1 NC_001798.1 + 132114 0.67 0.774343
Target:  5'- --uGGGGCCCGAGGUccUGCAggcggcccugcGCCGCc -3'
miRNA:   3'- cucCUCUGGGCUCCGu-ACGU-----------UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 130091 0.66 0.801613
Target:  5'- cGGGcacAGGCCCGGGGCGuUGCAcucgGgCGUAg -3'
miRNA:   3'- cUCC---UCUGGGCUCCGU-ACGU----UgGCGU- -5'
5326 3' -58.1 NC_001798.1 + 126588 0.68 0.706739
Target:  5'- -uGGAGAucCCCGGGGCccGCAGCUuCGg -3'
miRNA:   3'- cuCCUCU--GGGCUCCGuaCGUUGGcGU- -5'
5326 3' -58.1 NC_001798.1 + 123945 0.74 0.364422
Target:  5'- -cGGGGGCCUGGuGGCAccuccccgGCGGCCGCAu -3'
miRNA:   3'- cuCCUCUGGGCU-CCGUa-------CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 121846 0.67 0.774343
Target:  5'- gGAGGAGcagcucacgGCCCcggGAGGCGacacgGCcACCGCGg -3'
miRNA:   3'- -CUCCUC---------UGGG---CUCCGUa----CGuUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 116092 0.67 0.745943
Target:  5'- cGGGGGcGAccucCCCGAGGaGUGCAugGCCGUg -3'
miRNA:   3'- -CUCCU-CU----GGGCUCCgUACGU--UGGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.