miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 149967 0.68 0.716656
Target:  5'- -cGGAGACgCCGAcgggGGCGcgGCGcCCGCGg -3'
miRNA:   3'- cuCCUCUG-GGCU----CCGUa-CGUuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 146441 0.68 0.706739
Target:  5'- -cGGAGccCCCGGaGCccGCGGCCGCAg -3'
miRNA:   3'- cuCCUCu-GGGCUcCGuaCGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 147237 0.68 0.706739
Target:  5'- cGGGGGcCCCGGGGCcccgGGCCGCGc -3'
miRNA:   3'- cUCCUCuGGGCUCCGuacgUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 126588 0.68 0.706739
Target:  5'- -uGGAGAucCCCGGGGCccGCAGCUuCGg -3'
miRNA:   3'- cuCCUCU--GGGCUCCGuaCGUUGGcGU- -5'
5326 3' -58.1 NC_001798.1 + 86426 0.68 0.706739
Target:  5'- cGAGGcGGAcCCCGAGGC--GCAGCC-CGg -3'
miRNA:   3'- -CUCC-UCU-GGGCUCCGuaCGUUGGcGU- -5'
5326 3' -58.1 NC_001798.1 + 84052 0.68 0.696759
Target:  5'- cGAGcuGcACCCGGGGCAUGCGcACaaaGCAg -3'
miRNA:   3'- -CUCcuC-UGGGCUCCGUACGU-UGg--CGU- -5'
5326 3' -58.1 NC_001798.1 + 2219 0.68 0.696759
Target:  5'- cAGcGGGCCCGAGGCGcGCAGCgGg- -3'
miRNA:   3'- cUCcUCUGGGCUCCGUaCGUUGgCgu -5'
5326 3' -58.1 NC_001798.1 + 2493 0.68 0.686726
Target:  5'- cGGGucAGcGCCgCGGGGCGcgGCGGCCGCGg -3'
miRNA:   3'- cUCC--UC-UGG-GCUCCGUa-CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 33336 0.68 0.676648
Target:  5'- aGGGGGGCCCGAu-CGUGCAGagcaCGCAc -3'
miRNA:   3'- cUCCUCUGGGCUccGUACGUUg---GCGU- -5'
5326 3' -58.1 NC_001798.1 + 35421 0.68 0.676648
Target:  5'- -cGGGGGCCUaaugcggcggGAGGCGUG-GGCCGCu -3'
miRNA:   3'- cuCCUCUGGG----------CUCCGUACgUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 77386 0.69 0.666535
Target:  5'- cGAGcucacGACCCuGGGGUcgGCGGCCGCc -3'
miRNA:   3'- -CUCcu---CUGGG-CUCCGuaCGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 96062 0.69 0.666535
Target:  5'- aGAGGGGAUgucaGGGGCccGCcGCCGCAu -3'
miRNA:   3'- -CUCCUCUGgg--CUCCGuaCGuUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 46142 0.69 0.666535
Target:  5'- cAGGAGGCCCcuGGCAUugaGCGacgACCGCc -3'
miRNA:   3'- cUCCUCUGGGcuCCGUA---CGU---UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 32361 0.69 0.656393
Target:  5'- -cGGAGggcggccccgaGCCCGGGGCccGCGACCcgGCGc -3'
miRNA:   3'- cuCCUC-----------UGGGCUCCGuaCGUUGG--CGU- -5'
5326 3' -58.1 NC_001798.1 + 94004 0.69 0.646233
Target:  5'- uGGGGAGGCUgGAGaCGauuaucgGCAACCGCGa -3'
miRNA:   3'- -CUCCUCUGGgCUCcGUa------CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 6004 0.69 0.646233
Target:  5'- -cGGAGACCgGGacGGCA-GCGGCgGCAu -3'
miRNA:   3'- cuCCUCUGGgCU--CCGUaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 36110 0.69 0.636061
Target:  5'- gGGGGGGGCCC--GGC-UGCGucucGCCGCGa -3'
miRNA:   3'- -CUCCUCUGGGcuCCGuACGU----UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 150546 0.69 0.635044
Target:  5'- gGAGGAGacaaaggagagcgGCCCGGGGCccGCGggGCgGCGc -3'
miRNA:   3'- -CUCCUC-------------UGGGCUCCGuaCGU--UGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 23880 0.69 0.625887
Target:  5'- uGGGGGGcGCCCGAGGCGgaGgAGgCGCGg -3'
miRNA:   3'- -CUCCUC-UGGGCUCCGUa-CgUUgGCGU- -5'
5326 3' -58.1 NC_001798.1 + 9119 0.69 0.625887
Target:  5'- gGGGGAGccGCCgCGAGGUGgucUGCGGCaCGCGg -3'
miRNA:   3'- -CUCCUC--UGG-GCUCCGU---ACGUUG-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.