miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 121846 0.67 0.774343
Target:  5'- gGAGGAGcagcucacgGCCCcggGAGGCGacacgGCcACCGCGg -3'
miRNA:   3'- -CUCCUC---------UGGG---CUCCGUa----CGuUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 27607 0.67 0.774343
Target:  5'- aAGGGGGCgCgCGGGGC-UGCccuGCCGCc -3'
miRNA:   3'- cUCCUCUG-G-GCUCCGuACGu--UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 132114 0.67 0.774343
Target:  5'- --uGGGGCCCGAGGUccUGCAggcggcccugcGCCGCc -3'
miRNA:   3'- cucCUCUGGGCUCCGu-ACGU-----------UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 39770 0.67 0.768746
Target:  5'- cGGGGGGAagccgaccgccugguCCCGAGGC--GCGACCaCAc -3'
miRNA:   3'- -CUCCUCU---------------GGGCUCCGuaCGUUGGcGU- -5'
5326 3' -58.1 NC_001798.1 + 70331 0.67 0.76499
Target:  5'- -cGGAGGCgCG-GGCGUGCuggcacCCGCu -3'
miRNA:   3'- cuCCUCUGgGCuCCGUACGuu----GGCGu -5'
5326 3' -58.1 NC_001798.1 + 24717 0.67 0.76499
Target:  5'- --cGGGGCCCGcGGGC--GCGGCCGCc -3'
miRNA:   3'- cucCUCUGGGC-UCCGuaCGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 114272 0.67 0.75552
Target:  5'- -uGGAGcucgGCCUGuccguGGCGUGCGugUGCAc -3'
miRNA:   3'- cuCCUC----UGGGCu----CCGUACGUugGCGU- -5'
5326 3' -58.1 NC_001798.1 + 28199 0.67 0.75552
Target:  5'- cGGGGGGaaggcGCCgGAGGCcccGCAcGCCGCGc -3'
miRNA:   3'- -CUCCUC-----UGGgCUCCGua-CGU-UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 25242 0.67 0.75552
Target:  5'- cGAGGGccccGACCCGcaGGGCGgcugGC-GCCGCc -3'
miRNA:   3'- -CUCCU----CUGGGC--UCCGUa---CGuUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 25808 0.67 0.749786
Target:  5'- -uGGAGuuCCUGGGGCugcuggccggcgccUGCGACCGCc -3'
miRNA:   3'- cuCCUCu-GGGCUCCGu-------------ACGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 147702 0.67 0.745943
Target:  5'- aGGGGGGGuCCCagaaaGGGCAggcagGuCAGCCGCAc -3'
miRNA:   3'- -CUCCUCU-GGGc----UCCGUa----C-GUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 10615 0.67 0.745943
Target:  5'- cGAGcGGuuCCGGGGCGcgcaUGCAcGCCGCAu -3'
miRNA:   3'- -CUCcUCugGGCUCCGU----ACGU-UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 116092 0.67 0.745943
Target:  5'- cGGGGGcGAccucCCCGAGGaGUGCAugGCCGUg -3'
miRNA:   3'- -CUCCU-CU----GGGCUCCgUACGU--UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 4899 0.67 0.736267
Target:  5'- -cGGAGAUCCGGGGCcgccgGuCGucuccGCCGCGg -3'
miRNA:   3'- cuCCUCUGGGCUCCGua---C-GU-----UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 16184 0.67 0.726502
Target:  5'- -cGGGGACCgGGGGgAcGCAcggGCCGCc -3'
miRNA:   3'- cuCCUCUGGgCUCCgUaCGU---UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 74028 0.67 0.726502
Target:  5'- -uGGAGuACCCGGcGGCGcgcgGCGGCCuGCGu -3'
miRNA:   3'- cuCCUC-UGGGCU-CCGUa---CGUUGG-CGU- -5'
5326 3' -58.1 NC_001798.1 + 34734 0.67 0.726502
Target:  5'- cGAGGgucGGGCCCGGGaGCGggGCGGCC-CGg -3'
miRNA:   3'- -CUCC---UCUGGGCUC-CGUa-CGUUGGcGU- -5'
5326 3' -58.1 NC_001798.1 + 2097 0.67 0.726502
Target:  5'- gGGGGGGGCCCGcccccGGC--GCGGcCCGCGg -3'
miRNA:   3'- -CUCCUCUGGGCu----CCGuaCGUU-GGCGU- -5'
5326 3' -58.1 NC_001798.1 + 105194 0.68 0.716656
Target:  5'- cGGcGGGGCCCGcGGUggGCGACgGCGc -3'
miRNA:   3'- cUC-CUCUGGGCuCCGuaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 18255 0.68 0.716656
Target:  5'- -cGGGGGCCCGggggccAGGUAcGCAuccuCCGCGg -3'
miRNA:   3'- cuCCUCUGGGC------UCCGUaCGUu---GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.