miRNA display CGI


Results 41 - 60 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 5' -66.1 NC_001798.1 + 81583 0.66 0.430279
Target:  5'- gUCCCGCCUcaacaaaacacgGgGCGCgUGCCCGUgGCc -3'
miRNA:   3'- uGGGGCGGG------------CgUGUGgACGGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 4482 0.66 0.430279
Target:  5'- cUCCgGUCCGCGgACCcagcgGCCCGCguCg -3'
miRNA:   3'- uGGGgCGGGCGUgUGGa----CGGGCGguG- -5'
5326 5' -66.1 NC_001798.1 + 94234 0.66 0.430279
Target:  5'- aACCUCGCCgUGUACcaggACCUgGCCCugagccaguGCCACg -3'
miRNA:   3'- -UGGGGCGG-GCGUG----UGGA-CGGG---------CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 57721 0.66 0.430279
Target:  5'- aGCCCCGgccCCCGCGaaggACCggugggcgcGCCCGgCGCa -3'
miRNA:   3'- -UGGGGC---GGGCGUg---UGGa--------CGGGCgGUG- -5'
5326 5' -66.1 NC_001798.1 + 25981 0.66 0.429439
Target:  5'- -aCCUGCgCCGCACcgugcugGCCU-CCgGCCGCg -3'
miRNA:   3'- ugGGGCG-GGCGUG-------UGGAcGGgCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 60526 0.66 0.421924
Target:  5'- gGCCUgGCCCGUG-ACCgucagcuccaCCCGCCGCa -3'
miRNA:   3'- -UGGGgCGGGCGUgUGGac--------GGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 127653 0.66 0.421924
Target:  5'- cUCCCGCCUcuGuCACGCCaaCCCGgCCGCg -3'
miRNA:   3'- uGGGGCGGG--C-GUGUGGacGGGC-GGUG- -5'
5326 5' -66.1 NC_001798.1 + 141121 0.66 0.421924
Target:  5'- gACgCCGCCgGCGCAUCggcaaccagGgCCGCCGa -3'
miRNA:   3'- -UGgGGCGGgCGUGUGGa--------CgGGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 21647 0.66 0.421924
Target:  5'- uGCCCCGCUCGC-CGCCggcgucucUGUCuCGCUg- -3'
miRNA:   3'- -UGGGGCGGGCGuGUGG--------ACGG-GCGGug -5'
5326 5' -66.1 NC_001798.1 + 58036 0.66 0.421924
Target:  5'- cAUCCgCGgCCGCaccaGCACC--CCCGCCGCa -3'
miRNA:   3'- -UGGG-GCgGGCG----UGUGGacGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 92956 0.66 0.421924
Target:  5'- gGCCCUGCgUGCccggaacguggACGCCgugGCCCGCgCGg -3'
miRNA:   3'- -UGGGGCGgGCG-----------UGUGGa--CGGGCG-GUg -5'
5326 5' -66.1 NC_001798.1 + 121958 0.66 0.421924
Target:  5'- -aCCCG-CCGC-CACCcgGUCCGCgCGCg -3'
miRNA:   3'- ugGGGCgGGCGuGUGGa-CGGGCG-GUG- -5'
5326 5' -66.1 NC_001798.1 + 134166 0.66 0.421094
Target:  5'- gGCCgucgcggCCGCCCGCGcCGCgacgGCCCcgGCCGCc -3'
miRNA:   3'- -UGG-------GGCGGGCGU-GUGga--CGGG--CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 75439 0.67 0.416959
Target:  5'- -gCCCGCaCGCAUacgcaggccggggugGCCgGCCCGgCCGCg -3'
miRNA:   3'- ugGGGCGgGCGUG---------------UGGaCGGGC-GGUG- -5'
5326 5' -66.1 NC_001798.1 + 517 0.67 0.413669
Target:  5'- cGCCCCucccCCCGCGC-CCgcgGCCCcgaGCuCGCa -3'
miRNA:   3'- -UGGGGc---GGGCGUGuGGa--CGGG---CG-GUG- -5'
5326 5' -66.1 NC_001798.1 + 47830 0.67 0.413669
Target:  5'- gGCCCCGgcCCCGCGCGCgCU-CCU-CCACc -3'
miRNA:   3'- -UGGGGC--GGGCGUGUG-GAcGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 124427 0.67 0.413669
Target:  5'- uGCCCCGCggUCGCGCggGCCgugGCCagaGCCuCa -3'
miRNA:   3'- -UGGGGCG--GGCGUG--UGGa--CGGg--CGGuG- -5'
5326 5' -66.1 NC_001798.1 + 135763 0.67 0.413669
Target:  5'- aAUCCUccggcgGCCgGC-CGCCgGCCCGCCGg -3'
miRNA:   3'- -UGGGG------CGGgCGuGUGGaCGGGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 45514 0.67 0.413669
Target:  5'- cCCCCGUUCGCcccGgGCCcgUGCCCcCCGCg -3'
miRNA:   3'- uGGGGCGGGCG---UgUGG--ACGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 151272 0.67 0.413669
Target:  5'- -gCCgGCCCGCACgGCCgccucgGCCU-CCACg -3'
miRNA:   3'- ugGGgCGGGCGUG-UGGa-----CGGGcGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.