miRNA display CGI


Results 21 - 40 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 5' -66.1 NC_001798.1 + 114249 0.66 0.450718
Target:  5'- cACCCuguCGCUCGUGCgcuuucuggagcucgGCCUGUCCGUgGCg -3'
miRNA:   3'- -UGGG---GCGGGCGUG---------------UGGACGGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 126563 0.66 0.450718
Target:  5'- aACCCCGCCCuccGCuACAcgacccuggagauccCCgggGCCCGCaGCu -3'
miRNA:   3'- -UGGGGCGGG---CG-UGU---------------GGa--CGGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 91063 0.66 0.447274
Target:  5'- cCCCCGCa-GUACACCUuagggGCgCGCCGg -3'
miRNA:   3'- uGGGGCGggCGUGUGGA-----CGgGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 52943 0.66 0.447274
Target:  5'- gACCgCCGCCCuccggGCGCACgUGUCCGggaggCGCg -3'
miRNA:   3'- -UGG-GGCGGG-----CGUGUGgACGGGCg----GUG- -5'
5326 5' -66.1 NC_001798.1 + 22851 0.66 0.447274
Target:  5'- cACCCCGaaCCCGgAC-CgUcGcCCCGCCGCg -3'
miRNA:   3'- -UGGGGC--GGGCgUGuGgA-C-GGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 96998 0.66 0.447274
Target:  5'- gGCCaggGCCgGCcCGCC-GCCCGCCGa -3'
miRNA:   3'- -UGGgg-CGGgCGuGUGGaCGGGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 69881 0.66 0.438729
Target:  5'- cUCCCaCCCGacaGCACCcggGCCCGaacCCACg -3'
miRNA:   3'- uGGGGcGGGCg--UGUGGa--CGGGC---GGUG- -5'
5326 5' -66.1 NC_001798.1 + 54433 0.66 0.438729
Target:  5'- gACCCgGCgCGacaaCGCACC--CCCGCCGCu -3'
miRNA:   3'- -UGGGgCGgGC----GUGUGGacGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 69456 0.66 0.438729
Target:  5'- gGCCCUGUCCcccaaaaGCACCgGgCCGUCGCg -3'
miRNA:   3'- -UGGGGCGGGcg-----UGUGGaCgGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 57864 0.66 0.438729
Target:  5'- -gCCCGCCUGCcCcCCUGgccuuauaCCCGuCCACg -3'
miRNA:   3'- ugGGGCGGGCGuGuGGAC--------GGGC-GGUG- -5'
5326 5' -66.1 NC_001798.1 + 42714 0.66 0.438729
Target:  5'- uCCCCGUcgccgucgUCGC-CACCggccgaggGCCCGUCGCc -3'
miRNA:   3'- uGGGGCG--------GGCGuGUGGa-------CGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 109345 0.66 0.438729
Target:  5'- cACUCgCGCgUGCugGCCgGCCUgGCCGCc -3'
miRNA:   3'- -UGGG-GCGgGCGugUGGaCGGG-CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 142530 0.66 0.438729
Target:  5'- -gUCCGCCCGacCACACCc-CCCGCCc- -3'
miRNA:   3'- ugGGGCGGGC--GUGUGGacGGGCGGug -5'
5326 5' -66.1 NC_001798.1 + 153696 0.66 0.438729
Target:  5'- gGCCgCCGCCgGCGCagGCUcagGCgCGCCAg -3'
miRNA:   3'- -UGG-GGCGGgCGUG--UGGa--CGgGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 11048 0.66 0.438729
Target:  5'- gGCCCCGCCCaucCAuUACCcGCCUcCCAUg -3'
miRNA:   3'- -UGGGGCGGGc--GU-GUGGaCGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 29987 0.66 0.438729
Target:  5'- cCCCCGUgggCCGUGCGCC-GCCCcCCGa -3'
miRNA:   3'- uGGGGCG---GGCGUGUGGaCGGGcGGUg -5'
5326 5' -66.1 NC_001798.1 + 71417 0.66 0.438729
Target:  5'- -gCCCGCgCGgACGCCccCCgGCCACg -3'
miRNA:   3'- ugGGGCGgGCgUGUGGacGGgCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 137692 0.66 0.438729
Target:  5'- cGCCCCGCUagaGUACGagaucgacguuuCCUGCCCuGCUuguuGCg -3'
miRNA:   3'- -UGGGGCGGg--CGUGU------------GGACGGG-CGG----UG- -5'
5326 5' -66.1 NC_001798.1 + 150892 0.66 0.438729
Target:  5'- cCCCCGCaCCGC-CGCCc-CCgCGCCGg -3'
miRNA:   3'- uGGGGCG-GGCGuGUGGacGG-GCGGUg -5'
5326 5' -66.1 NC_001798.1 + 19981 0.66 0.436184
Target:  5'- aGCCCCGCCgGaCGCGgauuccggguucucCCgGCCgGCCGg -3'
miRNA:   3'- -UGGGGCGGgC-GUGU--------------GGaCGGgCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.