miRNA display CGI


Results 21 - 40 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 5' -66.1 NC_001798.1 + 3505 0.66 0.463759
Target:  5'- gGCCacggcggCCGCCaCGUGCgccaggccccaGCCgaagcgGCCCGCCGCc -3'
miRNA:   3'- -UGG-------GGCGG-GCGUG-----------UGGa-----CGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 3622 0.66 0.45591
Target:  5'- cGCCgCGCCCgagauccggaaGCAgGCCUgGUCCagcGCCACg -3'
miRNA:   3'- -UGGgGCGGG-----------CGUgUGGA-CGGG---CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 3907 0.7 0.264979
Target:  5'- gGCCCCGggccacggcucCCCGCugACgUaCCCGUCGCg -3'
miRNA:   3'- -UGGGGC-----------GGGCGugUGgAcGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 4163 0.68 0.344048
Target:  5'- cCCCCGCcuccucgucguCCGCGCcgaggguCCcGCCCGCgGCg -3'
miRNA:   3'- uGGGGCG-----------GGCGUGu------GGaCGGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 4482 0.66 0.430279
Target:  5'- cUCCgGUCCGCGgACCcagcgGCCCGCguCg -3'
miRNA:   3'- uGGGgCGGGCGUgUGGa----CGGGCGguG- -5'
5326 5' -66.1 NC_001798.1 + 4737 0.66 0.464635
Target:  5'- gGCCUC-CCCGgACGCCggGgCCGCCuCg -3'
miRNA:   3'- -UGGGGcGGGCgUGUGGa-CgGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 5300 0.66 0.45591
Target:  5'- gACgCCG-CCGCGCcCCgGCUCGCCGg -3'
miRNA:   3'- -UGgGGCgGGCGUGuGGaCGGGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 5359 0.72 0.183223
Target:  5'- gGCCCCGCCCcgACGCCcGCgCGuCCGCg -3'
miRNA:   3'- -UGGGGCGGGcgUGUGGaCGgGC-GGUG- -5'
5326 5' -66.1 NC_001798.1 + 5421 0.74 0.13051
Target:  5'- cGCUCCGCCCGCgcgGCAUCUcauuagcGCCCGgCGCg -3'
miRNA:   3'- -UGGGGCGGGCG---UGUGGA-------CGGGCgGUG- -5'
5326 5' -66.1 NC_001798.1 + 5552 0.7 0.242104
Target:  5'- gGCCCCGCgcucCCGUugGCC--CCCGCCGg -3'
miRNA:   3'- -UGGGGCG----GGCGugUGGacGGGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 5732 0.67 0.399865
Target:  5'- cGCCCUGCCCGgggcccgcgucauccCGCGCUccGCCCcaaagggggcgggGCCGCa -3'
miRNA:   3'- -UGGGGCGGGC---------------GUGUGGa-CGGG-------------CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 7468 0.7 0.247664
Target:  5'- aACCCCGCgcaacCCGCGgGCUUGCCUaGCC-Cg -3'
miRNA:   3'- -UGGGGCG-----GGCGUgUGGACGGG-CGGuG- -5'
5326 5' -66.1 NC_001798.1 + 7683 0.71 0.210901
Target:  5'- cGCCCagGCCCugGCGCACCUGCagaUGCUGCc -3'
miRNA:   3'- -UGGGg-CGGG--CGUGUGGACGg--GCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 8672 0.68 0.336852
Target:  5'- aACCa-GCCCGaCGCACCgcgUGCgCCGCCGu -3'
miRNA:   3'- -UGGggCGGGC-GUGUGG---ACG-GGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 9482 0.7 0.25333
Target:  5'- aACUCCaGUCCGCGUACagcucgCUGUCCGCCACg -3'
miRNA:   3'- -UGGGG-CGGGCGUGUG------GACGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 11048 0.66 0.438729
Target:  5'- gGCCCCGCCCaucCAuUACCcGCCUcCCAUg -3'
miRNA:   3'- -UGGGGCGGGc--GU-GUGGaCGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 14023 0.7 0.259101
Target:  5'- gUCCUuCCCGCACaACCcaUGCCCGgCACg -3'
miRNA:   3'- uGGGGcGGGCGUG-UGG--ACGGGCgGUG- -5'
5326 5' -66.1 NC_001798.1 + 14814 0.71 0.210901
Target:  5'- cGCCCCGCCCGgcCGCGCCaaaguUGUgCUGCCAa -3'
miRNA:   3'- -UGGGGCGGGC--GUGUGG-----ACG-GGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 15551 0.67 0.405513
Target:  5'- uGCCCgGCCC-CGgGCgUUGCcgCCGCCGCg -3'
miRNA:   3'- -UGGGgCGGGcGUgUG-GACG--GGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 18599 0.74 0.144199
Target:  5'- aGCCCCcccggGUCCGCGCGCC-GuCCCGCCGu -3'
miRNA:   3'- -UGGGG-----CGGGCGUGUGGaC-GGGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.