miRNA display CGI


Results 21 - 40 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 5' -66.1 NC_001798.1 + 145456 0.76 0.092341
Target:  5'- cCCCCGCCCggccgccGCGCGCCcccGCCCgGCCGCc -3'
miRNA:   3'- uGGGGCGGG-------CGUGUGGa--CGGG-CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 145414 0.76 0.092341
Target:  5'- cCCCCGCCCggccgccGCGCGCCcccGCCCgGCCGCc -3'
miRNA:   3'- uGGGGCGGG-------CGUGUGGa--CGGG-CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 150796 0.76 0.097305
Target:  5'- cCCCCGCCCGCAa--CgggGCgCCGCCGCu -3'
miRNA:   3'- uGGGGCGGGCGUgugGa--CG-GGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 23484 0.76 0.097305
Target:  5'- gACgCCGCCCGCGCcCCcGCCagCGCCGCa -3'
miRNA:   3'- -UGgGGCGGGCGUGuGGaCGG--GCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 25213 0.75 0.110155
Target:  5'- cGCCCCGCggCGCugACCcgccgGCCCGCCGa -3'
miRNA:   3'- -UGGGGCGg-GCGugUGGa----CGGGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 150689 0.75 0.115443
Target:  5'- cGCCCa-CCCGCGCGCCUgcgcgcgccccccGCCgGCCGCa -3'
miRNA:   3'- -UGGGgcGGGCGUGUGGA-------------CGGgCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 115302 0.75 0.115727
Target:  5'- cGCUUCGCCgCGCACGCCggggaccuggUGCCCGCCc- -3'
miRNA:   3'- -UGGGGCGG-GCGUGUGG----------ACGGGCGGug -5'
5326 5' -66.1 NC_001798.1 + 23337 0.75 0.118611
Target:  5'- cACCgCCGCCgGCGCGCCc-CCCGCCGg -3'
miRNA:   3'- -UGG-GGCGGgCGUGUGGacGGGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 25408 0.75 0.118611
Target:  5'- gACCCgCGCgCGCugGCCUcGCUgGCCGCg -3'
miRNA:   3'- -UGGG-GCGgGCGugUGGA-CGGgCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 52377 0.75 0.121562
Target:  5'- cACCgCgGCgCGC-CGCCUGCUCGCCACc -3'
miRNA:   3'- -UGG-GgCGgGCGuGUGGACGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 28545 0.75 0.121562
Target:  5'- uCCCCGCCCGCAgGugUGCUucuCGCCGCg -3'
miRNA:   3'- uGGGGCGGGCGUgUggACGG---GCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 25246 0.75 0.123365
Target:  5'- gGCCCCGaCCCGCagggcggcugGCGCCgccagccgccgggGCCCaGCCACa -3'
miRNA:   3'- -UGGGGC-GGGCG----------UGUGGa------------CGGG-CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 3133 0.74 0.12767
Target:  5'- -gCCCGCcuCCGCGCGCCgGCcgCCGCCACc -3'
miRNA:   3'- ugGGGCG--GGCGUGUGGaCG--GGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 5421 0.74 0.13051
Target:  5'- cGCUCCGCCCGCgcgGCAUCUcauuagcGCCCGgCGCg -3'
miRNA:   3'- -UGGGGCGGGCG---UGUGGA-------CGGGCgGUG- -5'
5326 5' -66.1 NC_001798.1 + 48409 0.74 0.130829
Target:  5'- cCCCCGCCCGCucgGCuucCCgucCCCGCCGCc -3'
miRNA:   3'- uGGGGCGGGCG---UGu--GGac-GGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 1159 0.74 0.133083
Target:  5'- aGCCCCGCggcgguccccaccaCCucCACGCCgccGCCCGCCGCg -3'
miRNA:   3'- -UGGGGCG--------------GGc-GUGUGGa--CGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 28975 0.74 0.13406
Target:  5'- cGCUCCGCCCGCcccagggggcgGCGCCggccaaccgcGCgCCGCCGCg -3'
miRNA:   3'- -UGGGGCGGGCG-----------UGUGGa---------CG-GGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 118071 0.74 0.137364
Target:  5'- gACCCCGCCCuGCuACGCagcGCCCGCgAUg -3'
miRNA:   3'- -UGGGGCGGG-CG-UGUGga-CGGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 26045 0.74 0.140743
Target:  5'- gGCCgCGCaCGCGCGCCUGUaccccgacgcgCCGCCGCu -3'
miRNA:   3'- -UGGgGCGgGCGUGUGGACG-----------GGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 151116 0.74 0.140743
Target:  5'- cCCCCGCCCGCccuCACC-GUCgGCCAg -3'
miRNA:   3'- uGGGGCGGGCGu--GUGGaCGGgCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.