miRNA display CGI


Results 1 - 20 of 308 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 5' -66.1 NC_001798.1 + 33643 1.08 0.000395
Target:  5'- cACCCCGCCCGCACACCUGCCCGCCACg -3'
miRNA:   3'- -UGGGGCGGGCGUGUGGACGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 33750 1.08 0.000395
Target:  5'- cACCCCGCCCGCACACCUGCCCGCCACg -3'
miRNA:   3'- -UGGGGCGGGCGUGUGGACGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 86092 0.84 0.025851
Target:  5'- gGCCCCGgCUGCGCGCCgccgcggacGCCCGCCGCg -3'
miRNA:   3'- -UGGGGCgGGCGUGUGGa--------CGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 24756 0.82 0.036156
Target:  5'- cGCCCCGCCUGCGCGCCUGgCUGCgCGa -3'
miRNA:   3'- -UGGGGCGGGCGUGUGGACgGGCG-GUg -5'
5326 5' -66.1 NC_001798.1 + 364 0.79 0.055882
Target:  5'- -gCCCGCCCGCACACgguucCCCGCCACc -3'
miRNA:   3'- ugGGGCGGGCGUGUGgac--GGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 25446 0.78 0.06492
Target:  5'- cGCCCCGCCCcccggcgGCGCGCCcgccgccuucgGCCCGCUGCg -3'
miRNA:   3'- -UGGGGCGGG-------CGUGUGGa----------CGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 139315 0.78 0.065085
Target:  5'- cGCCCCGCguCCGCAuCGCCggcGCCCGCgCGCg -3'
miRNA:   3'- -UGGGGCG--GGCGU-GUGGa--CGGGCG-GUG- -5'
5326 5' -66.1 NC_001798.1 + 28217 0.78 0.065085
Target:  5'- gGCCCCGCaCGcCGCGCCUGCC-GCCGCc -3'
miRNA:   3'- -UGGGGCGgGC-GUGUGGACGGgCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 27633 0.78 0.066755
Target:  5'- -gCCCGCCCGC-CGCCgccGCCCGCCu- -3'
miRNA:   3'- ugGGGCGGGCGuGUGGa--CGGGCGGug -5'
5326 5' -66.1 NC_001798.1 + 145729 0.78 0.075741
Target:  5'- gGCCCCgGCCCGCGC-CCcG-CCGCCACa -3'
miRNA:   3'- -UGGGG-CGGGCGUGuGGaCgGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 152646 0.77 0.077673
Target:  5'- cGCCCCGCCgGCGCgGCCcugaguggUGCCCGCCc- -3'
miRNA:   3'- -UGGGGCGGgCGUG-UGG--------ACGGGCGGug -5'
5326 5' -66.1 NC_001798.1 + 74746 0.77 0.077673
Target:  5'- gACCCCGCCCGCgaaGCCcucgGCCCcggacGCCGCg -3'
miRNA:   3'- -UGGGGCGGGCGug-UGGa---CGGG-----CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 749 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 869 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 689 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 809 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 839 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 719 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 779 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 145498 0.76 0.092341
Target:  5'- cCCCCGCCCggccgccGCGCGCCcccGCCCgGCCGCc -3'
miRNA:   3'- uGGGGCGGG-------CGUGUGGa--CGGG-CGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.